Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060339.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)                       30   2.0  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.2  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   6.2  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   8.1  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 138 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRL 251
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P +
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEV 57


>SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 296 NVGRTGDVLPTPLSNVETRPSPYSQHA-SHPSDHSLIYLGTMALTLIMIYGAARGKPAYL 472
           N   T    P+PL +   RP P S+HA +  +D  LIYL      ++     +R  PA L
Sbjct: 207 NSSLTDGFFPSPLKSAIARPLPKSKHAKTVENDVRLIYLTPQVAKIMEGLTLSRMLPAVL 266


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +2

Query: 188 APVPAPSGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYS 367
           A  P P  +++  ++    +       +S+PV   S V     + P   +  +T+P+P  
Sbjct: 447 AQAPVPQTSQAAQANTLPQTADKPQAHQSNPVPEVSQVAPKASLAPKANALPQTKPTPQD 506

Query: 368 QHASHPSD 391
           Q AS  SD
Sbjct: 507 QDASGDSD 514


>SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 554 IHALIAETRRVPFPRRVAAGCRRRPSPFVVISALIVGRDN 673
           I+ +  E+ R  F R V   CRR+ S  V     ++G DN
Sbjct: 301 IYVIFNESYRQGFARLVCCLCRRKGSRMVRPGVTVIGMDN 340


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 PTCSDWHNYPGIMAPVPAP 205
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 144 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRD 242
           FCL +      LG++HLF  L+ + V  A++ D
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVD 526


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 323 PTPLSNVETRPSPYSQHASHPSDHS 397
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,345,786
Number of Sequences: 59808
Number of extensions: 563815
Number of successful extensions: 1840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)