Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060339.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.58 
U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    28   7.2  
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    28   7.2  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 215
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 215
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 682 SL*IITAHDQSRDDDERRGPTPAARSNSSRKGNATGLRNQGMDLTQVTQIAQLPSKW*GK 503
           SL II+  D++       G   A  +  +  G A  +R+QG+D+  V  + + P    G+
Sbjct: 6   SLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEMLGGR 65

Query: 502 VEDL 491
           V+ L
Sbjct: 66  VKTL 69


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 394
           R+ D LPT L NV TRP+     +  P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461


>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = -2

Query: 291 HELTGDDSRSSSSAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSI 136
           H ++ +D  + +    DH +  ++  +P  AG+  ++   +   EHV  S++
Sbjct: 381 HTISAEDPHNRALITRDHYEESMRAFMPYFAGSKLVLNAFMNSYEHVSTSNV 432


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = -2

Query: 291 HELTGDDSRSSSSAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSI 136
           H ++ +D  + +    DH +  ++  +P  AG+  ++   +   EHV  S++
Sbjct: 381 HTISAEDPHNRALITRDHYEESMRAFMPYFAGSKLVLNAFMNSYEHVSTSNV 432


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 658 DQSRDDDERRGPTPAARSNSS 596
           ++  DDDE R  TPA+R +SS
Sbjct: 410 EEEEDDDESRVETPASRKSSS 430


>Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical
           protein W07G1.5a protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 658 DQSRDDDERRGPTPAARSNSS 596
           ++  DDDE R  TPA+R +SS
Sbjct: 398 EEEEDDDESRVETPASRKSSS 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,901
Number of Sequences: 27780
Number of extensions: 396342
Number of successful extensions: 1191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)