Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060339.seq
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62770.2 68416.m07051 transport protein-related weak similari... 31 0.95
At3g62770.1 68416.m07052 transport protein-related weak similari... 31 0.95
At1g09350.1 68414.m01046 galactinol synthase, putative contains ... 29 3.8
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 28 5.0
At4g39810.1 68417.m05639 exonuclease family protein contains exo... 28 5.0
At4g32630.1 68417.m04645 hypothetical protein 28 5.0
At3g02250.1 68416.m00206 expressed protein contains Pfam PF03138... 28 5.0
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to... 28 6.7
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to... 28 6.7
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont... 28 6.7
At1g27090.1 68414.m03302 glycine-rich protein 28 6.7
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ... 27 8.8
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa... 27 8.8
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to... 27 8.8
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to... 27 8.8
>At3g62770.2 68416.m07051 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); putative proteins - different
species
Length = 432
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Frame = +2
Query: 191 PVPAPSGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDV---------LPTPLSNV 343
P P P T + SD S D +D S + S+S++ D L P N+
Sbjct: 12 PNPNPDSTSASDSDSTFPSHRDRVDEPDS-LDSFSSMSLNSDEPNQTSNQSPLSPPTPNL 70
Query: 344 ETRPSPYSQHASHPSDHSLIYLGT 415
P P H S DH+ +GT
Sbjct: 71 PVMPPPSVLHLSFNQDHACFAVGT 94
>At3g62770.1 68416.m07052 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); putative proteins - different
species
Length = 307
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Frame = +2
Query: 191 PVPAPSGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDV---------LPTPLSNV 343
P P P T + SD S D +D S + S+S++ D L P N+
Sbjct: 12 PNPNPDSTSASDSDSTFPSHRDRVDEPDS-LDSFSSMSLNSDEPNQTSNQSPLSPPTPNL 70
Query: 344 ETRPSPYSQHASHPSDHSLIYLGT 415
P P H S DH+ +GT
Sbjct: 71 PVMPPPSVLHLSFNQDHACFAVGT 94
>At1g09350.1 68414.m01046 galactinol synthase, putative contains
Pfam profile: PF01501 glycosyl transferase family 8
Length = 334
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 154 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 53
C QK+ H P++LP +L+ A V++C++ S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -1
Query: 235 TIAAKTPSATRCRNRCHDPRIIVPVRTCRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVS 56
T+A P + + D I++ T + HSHSLP S + + A + S S
Sbjct: 253 TVAPGCPVRKQVQRCADDMSILI---TTYEGTHSHSLPLSATTMASTTSAAASMLLSGSS 309
Query: 55 SRICTDYISNRSYAAAR 5
S + I N Y +R
Sbjct: 310 SSPAAEMIGNNLYDNSR 326
>At4g39810.1 68417.m05639 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 236
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 474 CPSSVFRSSTLPHHFDGNW 530
C + +F STLP+H +G W
Sbjct: 177 CATVLFLESTLPNHLEGKW 195
>At4g32630.1 68417.m04645 hypothetical protein
Length = 531
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 272 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALT 427
+SP ++ ++ G +G V+P N+ T+ + + PSD S+ T+A+T
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSMEQT-TLAIT 411
>At3g02250.1 68416.m00206 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 512
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 156 VRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLMNW 263
+R TI+L W F+HLVA+G + PRLL W
Sbjct: 44 IRAMTILL-LWSCFVHLVAVGEMWG----PRLLKGW 74
>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 305
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 54 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 197
EL+ H +A + G ++ +WL CL++ GT++L W LF
Sbjct: 97 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143
>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 54 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 197
EL+ H +A + G ++ +WL CL++ GT++L W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203
>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor (Dentin phosphophoryn DPP,
Dentin sialoprotein DSP) [Homo sapiens]
Length = 792
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 670 ITAHDQSRDDDERRGPTPAARSNSSRKGNATGLRNQGMDLTQVTQIAQLPSKW*GKVEDL 491
+T +S D PT A + L + D+T + + S W G ++DL
Sbjct: 300 LTGTIESADSAIPNSPTEDAAPGEVEPLDHNALFDPTSDITNFIDFSGV-SSWSGNIQDL 358
Query: 490 KTEEG 476
KTE G
Sbjct: 359 KTETG 363
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 313 RCTAHTTVKCGNSSQPILSTCFTS 384
RC H + NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223
>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
identical to DNA repair and meiosis protein (Mre11)
GI:5524769 from [Arabidopsis thaliana]
Length = 720
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 642 TTKGEGRRRQPAATLRGKG 586
+TKG+GR+R PA T RG+G
Sbjct: 647 STKGKGRKR-PATTKRGRG 664
>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 306
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 315 SPVRPTLLHELTGDDSRSSSSAIEDHAQSLLK 220
SP LL L D+S SSSS+ + SLLK
Sbjct: 107 SPYLHRLLRHLASDNSGSSSSSSSSSSSSLLK 138
>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 318
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 99 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 197
H ++ + WL CL++ GT++L W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162
>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 99 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 197
H ++ + WL CL++ GT++L W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,289
Number of Sequences: 28952
Number of extensions: 382969
Number of successful extensions: 1177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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