Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   0.54 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 1  RHEEEVEHLFASADDDHDDV 60
          + +EEVEH  +  DDD +++
Sbjct: 23 KEDEEVEHRLSDRDDDDENI 42


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 191 LTPFHRFNLNXI*LATXPXFGTVIYYXFLHYLMYVIIHINLS 316
           +TPF+ FN N I       + T +    L +++ +  + NLS
Sbjct: 420 ITPFYNFNENTIHSKLCKLYATFLIALKLVWIVALFKNENLS 461


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 307 KPFSSITLYIKKNRVKI 357
           KP ++  LY+K+ R K+
Sbjct: 481 KPLNAFMLYMKEMRAKV 497


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 307 KPFSSITLYIKKNRVKI 357
           KP ++  LY+K+ R K+
Sbjct: 373 KPLNAFMLYMKEMRAKV 389


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,957
Number of Sequences: 336
Number of extensions: 2248
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)