Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    26   4.1  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   4.1  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    25   9.4  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.4  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEEVLR 84
           +EEV  +   AD D D V+++EE  R
Sbjct: 120 QEEVADMIREADTDGDGVINYEEFSR 145


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 10  EEVEHLFASADDDHDDVLSFEE 75
           E +E  F  AD DH   LSFEE
Sbjct: 333 EFLEETFQKADADHSGKLSFEE 354


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 232 SDXPSLRNCNLLXISPLFNVCYYTYKPFS 318
           SD   ++NCNL  +   + + YY Y   S
Sbjct: 9   SDLTGMQNCNLHNLPENYQLKYYLYHAIS 37


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 242 PXFGTVIYYXFLHYLMYVIIHI 307
           P FGT+  Y ++  ++Y +IH+
Sbjct: 204 PYFGTLSSYGYVLMVLYYLIHV 225


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 61  LSFEEVLRHHDVFVGSEASDAARDLLGEHFDDXL 162
           +S  E L++     G   S+   D + EHFD+ L
Sbjct: 63  MSTNETLKNAQEVAGKLLSEENEDSISEHFDEYL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,732
Number of Sequences: 5004
Number of extensions: 36449
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)