Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1776 + 29436477-29438240                                         29   3.2  
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    28   5.6  
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883...    27   9.7  
05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751           27   9.7  
04_04_1618 + 34822644-34822915,34823008-34823369,34824721-348247...    27   9.7  

>07_03_1776 + 29436477-29438240
          Length = 587

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   RHEEEVEHLFASADDDHDDVLSFEEVLRHHD 93
           R EEE+E   A+A  D  D L F EV+ H D
Sbjct: 533 RCEEELEAAIATATGDKADSLCFIEVVAHKD 563


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 4   HEEEVEHLFASADDDHDDVLSFEEVLR 84
           + EE++ L++ AD D DD++ ++E  R
Sbjct: 360 NSEEIKDLWSEADHDGDDIVDYKEFQR 386


>11_02_0151 +
           8837444-8837876,8838173-8839434,8839517-8839885,
           8839963-8840223,8840230-8840442,8840602-8840967,
           8841402-8841667,8842087-8842197,8842288-8842317,
           8842444-8842465
          Length = 1110

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 542 FAYVCR*GALFPTAYEIGXNFYAIENVKNLRT 637
           F + CR     PTA   G  FYAI N K + T
Sbjct: 111 FDWACRTAGFGPTAEMFGAIFYAIVNSKTVVT 142


>05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751
          Length = 311

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 22  HLFASADDDHDDVLSFEEVLRHHDVFVGSEASD 120
           H   + DDDHD+  + E+ L   D  V  +A D
Sbjct: 90  HAADAHDDDHDEQAALEQELESEDEEVDDDAED 122


>04_04_1618 +
           34822644-34822915,34823008-34823369,34824721-34824796,
           34824887-34824980,34825086-34825223
          Length = 313

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 25  LFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL--LGEHFDDXL 162
           L   ADD+ D+ LS EE+L H+  F      D   D   +G +  D L
Sbjct: 265 LLMKADDNKDNKLSLEEMLNHYLSFYNIVYMDDHYDYDDIGNNIHDEL 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,360
Number of Sequences: 37544
Number of extensions: 198859
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)