Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)                48   7e-06
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 40   0.001
SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34261| Best HMM Match : efhand (HMM E-Value=5.3e-14)                28   5.7  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   5.7  
SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)                28   5.7  
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                27   9.9  
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_21889| Best HMM Match : Mak16 (HMM E-Value=3.8)                     27   9.9  
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 27   9.9  
SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                27   9.9  

>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
          Length = 308

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +1

Query: 10  EEVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           EE +HL +SADD+ D  L+ EE+ +++ VFVGSEA+D  R L
Sbjct: 262 EEAKHLVSSADDNSDGKLTIEEIEKNYAVFVGSEATDYGRAL 303


>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 10  EEVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           +E +HL   +D++ D  L  +E+L H D+FVGS+A+D    L
Sbjct: 185 DEAKHLIDGSDENADGDLQLDEILLHWDLFVGSKATDHGETL 226


>SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEEVLRHHDVFV 102
           +EE  H+   ADD+ D  LS EE+L+H  VFV
Sbjct: 55  KEEPAHMIKEADDNKDGKLSMEEILKHSSVFV 86


>SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 13  EVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           E +HL    D + D +L+ +E++ + + FVGS A++  + L
Sbjct: 206 EAQHLINEVDKNEDGMLTKDEIMDNFEKFVGSRAAEFGQAL 246


>SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 4   HEEEVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDLLGEHFDDXL*XASTRA 183
           +E+E+  LF   D+D D  +SF E L  H +F    A D  +D + E F +         
Sbjct: 273 NEQELTLLFEELDEDGDGKVSFNEFL--HGLFA---AKDHYQDTIEEEFVEMTHSTPAYT 327

Query: 184 RPPNSISS 207
           +PP+  +S
Sbjct: 328 QPPSGNTS 335


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEE 75
           +E VEH+FA AD D +  +S+EE
Sbjct: 696 DEMVEHVFAYADADKNGEISYEE 718


>SB_34261| Best HMM Match : efhand (HMM E-Value=5.3e-14)
          Length = 148

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   HEEEVEHLFASADDDHDDVLSFEEVL 81
           +E E+EH+  +AD + D  + FEE +
Sbjct: 117 NESEIEHMMEAADTNEDGKVDFEEFM 142


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 13  EVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           +V+  F+  DDD +  L+ EE      +F+G +  D   DL
Sbjct: 376 QVQQAFSKLDDDQNGYLTLEEFTAGFGLFLGLDGVDNDGDL 416


>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEEVLR 84
           ++EV+ LFA  D D    L FEE LR
Sbjct: 73  DDEVKQLFAQFDKDGSGSLDFEEFLR 98


>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 28  FASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDLLGEHFDD 156
           +  ADD+HD V+  ++V   HDV V  +  D    ++ +  DD
Sbjct: 265 YDDADDEHDVVVD-DDVDDEHDVVVDDDVDDEHDVVVDDDVDD 306


>SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARD 132
           +H ++S+DDD D+V+    + +   +F+    +D   D
Sbjct: 191 QHKYSSSDDDSDEVIPSSPIGKKRSIFLKRALADIHTD 228


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARD 132
           +H ++S+DDD D+V+    + +   +F+    +D   D
Sbjct: 113 QHKYSSSDDDSDEVIPSSPIGKKRSIFLKRALADIHTD 150


>SB_21889| Best HMM Match : Mak16 (HMM E-Value=3.8)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARD 132
           +H ++S+DDD D+V+    + +   +F+    +D   D
Sbjct: 166 QHKYSSSDDDSDEVIPSSPIGKKRSIFLKRALADIHTD 203


>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 406

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARD 132
           +H ++S+DDD D+V+    + +   +F+    +D   D
Sbjct: 202 QHKYSSSDDDSDEVIPSSPIGKKRSIFLKRALADIHTD 239


>SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 320

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARD 132
           +H ++S+DDD D+V+    + +   +F+    +D   D
Sbjct: 116 QHKYSSSDDDSDEVIPSSPIGKKRSIFLKRALADIHTD 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,316
Number of Sequences: 59808
Number of extensions: 252186
Number of successful extensions: 603
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)