Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    46   3e-05
AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical ...    43   2e-04

>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           E E  HL   ADD+ D  L+ +E++ H+D FVGS+A+D    L
Sbjct: 264 EAEARHLVGIADDNKDGKLNLDEIVAHYDTFVGSQATDYGEQL 306


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 7   EEEVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDL 135
           E E  HL   ADD+ D  L+ +E++ H+D FVGS+A+D    L
Sbjct: 264 EAEARHLVGIADDNKDGKLNLDEIVAHYDTFVGSQATDYGEQL 306


>AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical
           protein F08B6.3 protein.
          Length = 301

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +1

Query: 13  EVEHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDLLGEHFDDXL 162
           E E L  ++DDD D  LS+EE+++HH +F  +EA+  A  L   +  D L
Sbjct: 252 EAESLLTNSDDDKDGQLSYEEIVKHHALFAKTEAAQEADHLHPYYSHDEL 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,038,063
Number of Sequences: 27780
Number of extensions: 197389
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)