Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060338.seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27790.1 68417.m03991 calcium-binding EF hand family protein ...    31   0.66 
At4g26560.1 68417.m03828 calcineurin B-like protein, putative si...    29   2.7  
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...    27   8.1  

>At4g27790.1 68417.m03991 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 345

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 37  ADDDHDDVLSFEEVLRHHDVF 99
           AD+D D  LS EE+L H DVF
Sbjct: 305 ADEDKDGKLSLEEMLHHEDVF 325


>At4g26560.1 68417.m03828 calcineurin B-like protein, putative
           similar to calcineurin B-like protein 3 [Arabidopsis
           thaliana] GI:3309086, calcineurin B-like protein 2
           [Arabidopsis thaliana] GI:3309084; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 214

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 19  EHLFASADDDHDDVLSFEEVLRHHDVFVGSEASDAARDLLGEHFD 153
           E +F   D +HD +L FEE  R   VF  S   D   DL  + +D
Sbjct: 76  ERVFDLFDTNHDGLLGFEEFARALSVFHPSAPIDDKIDLSFQLYD 120


>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 378 LSIHRNRYRDRENDFVLNYVVITKTIRTRIRVLS 479
           L    +RYR R  D +LN V + +  RTR +++S
Sbjct: 256 LKDQESRYRQRHLDMILN-VEVRQIFRTRAKIIS 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,009
Number of Sequences: 28952
Number of extensions: 175682
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)