Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060337.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   7.8  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.8  

>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 84  SPQCIYVKLLTGQDIYERWIDTSD 13
           S QC+   L    D+Y  WID  D
Sbjct: 55  SHQCLITALSAPIDVYSDWIDACD 78


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 275 DGMFVRLVHF*FQNETIKRTNAPVRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKH 448
           DGM V   +F  +  T+K +    R  V +++   CA   F+    +I + + F+ KH
Sbjct: 178 DGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFFGC--VIGYLLSFILKH 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,935
Number of Sequences: 5004
Number of extensions: 44340
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)