Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060337.seq
(695 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 29 0.042
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 3.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.4
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 29.1 bits (62), Expect = 0.042
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +3
Query: 426 IWCFYLNIICF-NVNGLCXISVDRFCIIIFSLK--IKFSRIWIFIYLMILFI 572
+W + + C ++ LC ISVDRFC I LK +K + + +Y+ ++++
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWL 167
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.6 bits (46), Expect = 3.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 14 SEVSIHLSYISCPVRSLTYIH 76
S ++I + YISCP S+ + H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 500 VDRLCLIVFTL 510
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
VDR C+I+F+L
Sbjct: 500 VDRLCLIVFTL 510
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 486 VDRFCIIIFSL 518
+DR C+IIF+L
Sbjct: 526 IDRMCLIIFTL 536
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,850
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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