Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.4  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   5.8  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   5.8  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   7.7  

>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 397 AYGRSYSPKYLKFIDTLDSPMDDKNAYL 480
           AY R++   Y +F+D++DS  +++N  L
Sbjct: 81  AYTRAFLKSYFRFLDSIDSGHNERNEAL 108


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 291 PIHNPTWLSFNGRSKNFNA 347
           P HNPT    NG S N+NA
Sbjct: 283 PTHNPTSSYGNGASTNYNA 301


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 468 ECVSEGDQEIRFRLSAWPVTFTADPEERQESWLQ 569
           E VS  D+ I + LSA  +       E+Q  WLQ
Sbjct: 64  ELVSTSDKGIDYTLSAMSINPNLSVPEQQHLWLQ 97


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 171 TSMDDKRIRIARSELKRLVKGPLQRPIPYQNRLLCNSIDLPIHNPTWL 314
           T +DD    +   E+KR  K PL+    YQ     +++  P H+PT L
Sbjct: 132 THIDDSLRDVHMPEMKRKFKPPLRPNTMYQT---ISALPKPRHDPTVL 176


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 220 LFNSDRAIRILLSSIEVNLVESRRKH 143
           LFN D  ++I++ +I  N  ESR +H
Sbjct: 145 LFNMDALLQIVMFNIYGNQYESREEH 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,077
Number of Sequences: 5004
Number of extensions: 63609
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)