Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    32   0.37 
02_02_0351 + 9257204-9261388                                           29   2.6  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    28   7.9  

>03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,
            9759974-9760033,9760519-9760555,9761268-9761347,
            9761413-9761516,9761613-9761673,9762962-9763019,
            9763866-9763918,9764357-9765320,9766131-9766185,
            9767223-9768786
          Length = 1133

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 3    ARGGRTAAPRIFLFQLSRVKRKIQYYSAYNASSWGLLWLE*GVCGDACFLLDSTRFTSMD 182
            A+G    A R+FL +L +V+ K+   +  ++  +GL  L   +CG      DS   T+ D
Sbjct: 986  AKGQPDVATRLFLRRL-KVELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPD 1044

Query: 183  DKRIRIARSELKR 221
             K + +  S+L +
Sbjct: 1045 IKWLGVRPSDLDK 1057


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 489  QEIRFRLSAWPVTFTADPEERQE--SWLQNHPFAKCANMDLPCLSEGL 626
            +E+RFR   W  +FT + EE  +  + LQ   F KC  + L  L EGL
Sbjct: 1289 RELRFRYDLWMESFTEEQEEALQLLTSLQCLKFRKC--LRLQSLPEGL 1334


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 267  LLCNSIDLPIHNPTWLSFNGRSKNFNALLRRHR 365
            LL   + +P  +P WL+  GR K FNA L++ R
Sbjct: 1131 LLVGLLFIP-ESPRWLANTGRVKEFNASLQKLR 1162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,609,169
Number of Sequences: 37544
Number of extensions: 409497
Number of successful extensions: 1072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)