Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.66 
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           28   6.1  
SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)            28   8.1  

>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 483 GDQEIRFRLSAWPVTFTADPEERQESWL 566
           G Q  R  LS WP  +  +P+ ++ SWL
Sbjct: 74  GPQRARLNLSKWPQGYRGNPKSQENSWL 101


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 172 LRWTTRGSVSPGRS*KDW*KDPCNGLYRIRIGYYATPLICLYIIQRGFLSM 324
           LRW    +++P    +   K+P +G   + + Y + PL+ L+++  GF+ M
Sbjct: 220 LRWPGGAAMTPRDVSQPVTKNPPSGGEAVEV-YISVPLVILFVVCGGFIGM 269


>SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)
          Length = 596

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 GDQEIRFRLSAWPVTFTADPEERQESWL 566
           G Q  R  L  WP  +  +P+ ++ SW+
Sbjct: 54  GPQRARLNLLKWPQGYRGNPKSQENSWV 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,528,390
Number of Sequences: 59808
Number of extensions: 470700
Number of successful extensions: 1029
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)