Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.     25   2.2  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   3.9  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    23   6.8  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    23   6.8  

>AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = -2

Query: 489 DRLQIRILVVHGRVQSVNEFQIFRTVRSSICSHYEENSSYTADASEEAH*SFYF 328
           D + ++ + VHG V  +     ++ +R +I   +     + + A  E H  ++F
Sbjct: 269 DPMYVKAVTVHGEVYHLTWINHYKAIRKAIGIEWPGYMIHESGAWSEVHRRWFF 322


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 403 HMLALRRKQ*LYSRCLRRSALKFLLLPLKESHVGLCIGRSM 281
           H+L L+  + L +R  R  A++ +      SHV +C+  SM
Sbjct: 771 HVLVLKENRQLANRVHRLLAMRVVRAYKTISHVAVCVIASM 811


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 114 TVDPMMMRYKQSNIEFSF*LCLIE 43
           TV   M+R++ +N+EF F L L E
Sbjct: 238 TVFVHMLRWQLANLEFEFHLSLAE 261


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 286 ICLYIIQRGFLSMEEVKTLMRFFGGI 363
           +C Y+ + G   +  ++TLM F GG+
Sbjct: 381 LCKYVPEPGDAYVVPIRTLMLFGGGL 406


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,546
Number of Sequences: 2352
Number of extensions: 15590
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)