Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060336.seq
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX511262-2|CAM45793.1| 601|Homo sapiens HLA-B associated transc... 45 3e-04
BX248244-2|CAM26084.1| 601|Homo sapiens HLA-B associated transc... 45 3e-04
BC031839-1|AAH31839.1| 558|Homo sapiens HLA-B associated transc... 45 3e-04
BA000025-23|BAB63383.1| 558|Homo sapiens BAT5 protein. 45 3e-04
AL805934-43|CAI18530.1| 558|Homo sapiens HLA-B associated trans... 45 3e-04
AL670886-34|CAI17808.2| 601|Homo sapiens HLA-B associated trans... 45 3e-04
AL662899-18|CAI18401.2| 601|Homo sapiens HLA-B associated trans... 45 3e-04
AK023194-1|BAB14455.1| 558|Homo sapiens protein ( Homo sapiens ... 45 3e-04
AF193047-1|AAG22475.1| 558|Homo sapiens unknown protein. 45 3e-04
AF129756-9|AAD18079.1| 558|Homo sapiens BAT5 protein. 45 3e-04
BX248244-1|CAM26083.1| 264|Homo sapiens HLA-B associated transc... 31 5.0
AL805934-42|CAO03670.1| 264|Homo sapiens HLA-B associated trans... 31 5.0
AL670886-33|CAM25029.1| 264|Homo sapiens HLA-B associated trans... 31 5.0
AL662899-17|CAM25666.1| 264|Homo sapiens HLA-B associated trans... 31 5.0
>BX511262-2|CAM45793.1| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 113 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 172
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 173 ILEATHRNQSSENKRQLANYNFD 195
>BX248244-2|CAM26084.1| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 113 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 172
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 173 ILEATHRNQSSENKRQLANYNFD 195
>BC031839-1|AAH31839.1| 558|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>BA000025-23|BAB63383.1| 558|Homo sapiens BAT5 protein.
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>AL805934-43|CAI18530.1| 558|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>AL670886-34|CAI17808.2| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 113 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 172
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 173 ILEATHRNQSSENKRQLANYNFD 195
>AL662899-18|CAI18401.2| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 113 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 172
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 173 ILEATHRNQSSENKRQLANYNFD 195
>AK023194-1|BAB14455.1| 558|Homo sapiens protein ( Homo sapiens
cDNA FLJ13132 fis, clone NT2RP3003008. ).
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>AF193047-1|AAG22475.1| 558|Homo sapiens unknown protein.
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>AF129756-9|AAD18079.1| 558|Homo sapiens BAT5 protein.
Length = 558
Score = 44.8 bits (101), Expect = 3e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 IGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFID 441
I YY++P Y+ ++G+LS+ +V + G + + +R GR +P+Y +FI
Sbjct: 70 ISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFIT 129
Query: 442 TLDSPMDDKNAYLK-AIRKYDFD 507
L++ ++++ K + Y+FD
Sbjct: 130 ILEATHRNQSSENKRQLANYNFD 152
>BX248244-1|CAM26083.1| 264|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 264
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 GFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLK-A 486
G+LS+ +V + G + + +R GR +P+Y +FI L++ ++++ K
Sbjct: 53 GYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQ 112
Query: 487 IRKYDFD 507
+ Y+FD
Sbjct: 113 LANYNFD 119
>AL805934-42|CAO03670.1| 264|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 264
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 GFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLK-A 486
G+LS+ +V + G + + +R GR +P+Y +FI L++ ++++ K
Sbjct: 53 GYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQ 112
Query: 487 IRKYDFD 507
+ Y+FD
Sbjct: 113 LANYNFD 119
>AL670886-33|CAM25029.1| 264|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 264
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 GFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLK-A 486
G+LS+ +V + G + + +R GR +P+Y +FI L++ ++++ K
Sbjct: 53 GYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQ 112
Query: 487 IRKYDFD 507
+ Y+FD
Sbjct: 113 LANYNFD 119
>AL662899-17|CAM25666.1| 264|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 264
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 GFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLK-A 486
G+LS+ +V + G + + +R GR +P+Y +FI L++ ++++ K
Sbjct: 53 GYLSLSKVVPFSHYAGTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQ 112
Query: 487 IRKYDFD 507
+ Y+FD
Sbjct: 113 LANYNFD 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,684,242
Number of Sequences: 237096
Number of extensions: 2220501
Number of successful extensions: 8411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8411
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -