Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical p...    38   0.009
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    29   2.3  
U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    28   5.4  
AF016452-18|AAB66009.1|  405|Caenorhabditis elegans Hypothetical...    28   5.4  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    27   9.4  
AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical
           protein F37A4.1 protein.
          Length = 482

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +1

Query: 244 GLYRIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIATVFFVMRAYGRSYSPK 423
           G+Y I       P+I  Y+  R +L+   + T++++    G +  + +  R +GR +   
Sbjct: 40  GIYYIASSLAFGPVILCYLYSRDWLTPAGMLTILKY---AGYLTLIGYGARTFGRLFDET 96

Query: 424 YLKFIDTLDSPMD--DKNAYLKAIRKYDFD 507
             +F+D  ++  +  D N++  A++KYDF+
Sbjct: 97  NSRFLDIWENEKNKKDDNSH-AALKKYDFE 125


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 235 PCNGLYRIRIGYYATPLICLYIIQRGFLSMEEVKTL-MRFFGGIGC 369
           P  G+  + IGY A PL+ LY      ++M  +K+   R  G + C
Sbjct: 276 PVFGIQFVEIGYIAPPLVALYPCLEPLVAMYCIKSFRFRILGWLTC 321


>U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical
           protein T27A3.6 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 349 FFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLKAIRKYDFD 507
           +F  +   A V  + RA  RS +   L FID  +S  DDKN  +   R+   D
Sbjct: 143 YFVNVAFPAYVRHLERARQRSRTDSRLTFIDVSESKFDDKNKSIVNFRQQILD 195


>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +3

Query: 66  KIQYYSAYNASSWG----LLWLE*GV-CGDACFLLDSTRFTSMDDKRIRIARSELKR 221
           ++Q ++ ++ +SW     ++ +  G+ CG A     +  F  M D + R++RS LKR
Sbjct: 178 ELQNFAIFHFNSWCYYLVVVTISGGLFCGGAAIFTTADMFRMMKDLQTRVSRSSLKR 234


>AF016452-18|AAB66009.1|  405|Caenorhabditis elegans Hypothetical
           protein T05H4.2 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -2

Query: 522 QAKRRVEIVFPDRLQIRILVVHGRVQSVNEFQIFRTVRSSICSHYEE 382
           Q   +++ +  D   +RIL++H  +Q +  F  ++ +      H+ E
Sbjct: 24  QIDPKIQCIVTDPRAVRILILHQHLQGIPVFNAYKAMNKVFGDHFME 70


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 495 FPDRLQIRILVVHGRVQSVNEFQIFRTV-RSSICSHYEE 382
           + +RLQ  ++ +  R   VN  QI+ ++ RS+ C+ Y E
Sbjct: 164 YAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLE 202


>AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical
           protein Y17G7B.3 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 55  ELKGKFNITL---LITHHHGVYCG*NEAY 132
           EL  K NI +   L THHH  +CG NE +
Sbjct: 40  ELADKENIDITAVLTTHHHYDHCGGNEGF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,484
Number of Sequences: 27780
Number of extensions: 351770
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)