Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060336.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 300 NPTWLSFNGRSKNFNALLRRHRLYSY 377
           N TWL  N   K+ N   ++   YS+
Sbjct: 440 NKTWLPVNENYKSLNLAAQKREYYSH 465


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 536 SGKGYRPSGESKSYFLIAFRYAFLSSMGESKVSMNFKYFG 417
           SG  Y  SG+   Y   A     L+SMG   V + F   G
Sbjct: 240 SGSTYGVSGQRWQYAARAAISTMLASMGGGLVGLGFSLNG 279


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 423 IFEIH*HFGLSHGRQECVSEGDQEIRFRLSAWPVTFTADPEER 551
           +FE    F  S+  +E ++EG   ++ R+ AW      +P ++
Sbjct: 309 LFEFPIKFVPSYPFEEDINEGSNYMQTRVPAWCDRVLLNPTDK 351


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -2

Query: 468 LVVHGRVQSVNEFQIFRTVRSSICSHYEENSSY 370
           + +HG VQS +++ +   V ++   ++E    Y
Sbjct: 107 VTMHGTVQSYDKYDLLENVNNAARINWEYLDKY 139


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
 Frame = -1

Query: 685 METNYRKVMGPAIKAQNLDYNPSDKQGKSMFAHFAKGWFCSQLSCLSSGSAV----KVTG 518
           +ET+  +  G   +  +LD   +  +  S+  H  K        C SS SAV      T 
Sbjct: 201 IETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTK 260

Query: 517 QAESRNRIS*SPSDTHS--CRPWESPKCQ*ISNISD 416
             +  N +  + SD +    R W +P    +S+ SD
Sbjct: 261 GWDGSNMVEGNESDHNDGRLRYWRTPSVV-VSDYSD 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,963
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)