Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060335.seq
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    45   9e-06
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.4  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   3.2  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  MSWQDYVDKQLMASRCVTKAAIAGH-DXNVWAKSEGFXISKDXVAKIVAGFEN 236
           MSWQ YVD  L+ +  + +AAI      +VWA S GF +S   +  + AGF++
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQD 53



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 328 KVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCGY 456
           K G+ C  T+  +++S Y E   P + A + E L  YL+  GY
Sbjct: 85  KEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 239 ITANEXGVTIAGTRYIYLXGTDHIIRAXLARSACIAXRHSKLWSFLSMKN 388
           +T N  G +   T+Y  L   +H++R        I    S++W F S KN
Sbjct: 64  VTNNGNGNSNVSTQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKN 113


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 307 YHPREXGKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLG 432
           +HP + G  G+ C K   A +   YE+PI  +    +    G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,833
Number of Sequences: 5004
Number of extensions: 36695
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)