Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060335.seq
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           46   4e-05
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           46   4e-05
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           44   1e-04
04_03_0265 - 13638816-13641348,13641432-13641490                       28   7.7  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 81  MSWQDYVDKQLMAS---RCVTKAAIAGHDXNVWAKSEGFXISK-DXVAKIVAGFENXSLL 248
           MSWQ YVD+ LM       +T AAI GHD  VWA+S  F   K + +  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCG 453
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 81  MSWQDYVDKQLMAS---RCVTKAAIAGHDXNVWAKSEGFXISK-DXVAKIVAGFENXSLL 248
           MSWQ YVD+ LM       +T AAI GHD  VWA+S  F   K + +  I+  F+    L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCG 453
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 81  MSWQDYVDKQLMAS---RCVTKAAIAGHDXNVWAKSEGFXISK-DXVAKIVAGFENXSLL 248
           MSWQ YVD  LM       +T AAI GHD +VWA+S  F   K + +  I+  F+    L
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCG 453
           G  G+   KT  ++++ +Y+EP+ P Q   +VE+LG YLI  G
Sbjct: 88  GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 326 PXSRG*YGLCX*GRCTACPLSS 261
           P + G YG+C  G+CT CPL S
Sbjct: 346 PMACGKYGICTGGQCT-CPLQS 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,255
Number of Sequences: 37544
Number of extensions: 244385
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)