Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060335.seq
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   28   7.9  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  28   7.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 129 VTKAAIAGHDXNVWAKSEGFXISKDXVAKIVAGFENXSL 245
           V +AAI G D + WA S GF +S+    +++   ++ S+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCGY 456
           G  G     T Q ++I  Y E + P   ++V EKL  Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 328 KVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLG 432
           K G+   KT   ++++LY + + P       EKLG
Sbjct: 42  KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,234
Number of Sequences: 59808
Number of extensions: 291600
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)