Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060335.seq
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    47   1e-05
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    47   1e-05
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    33   0.24 
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    33   0.24 

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +3

Query: 81  MSWQDYVDKQLMASRCVTKAAIAGHDXNVWAKSEGFXISKDXVAKIVAGFENXSLL 248
           MSW D ++  L+ S  V+KAAI G D  VWAKS+ F IS +        F +   L
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDAL 56



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCGY 456
           G  G    KT QAV+IS+YE+ +QP+  +     L  Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +3

Query: 81  MSWQDYVDKQLMASRCVTKAAIAGHDXNVWAKSEGFXISKDXVAKIVAGFENXSLL 248
           MSW D ++  L+ S  V+KAAI G D  VWAKS+ F IS +        F +   L
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDAL 56



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCGY 456
           G  G    KT QAV+IS+YE+ +QP+  +     L  Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  WQDYVDKQLMASRCVTKAAIAGHDXNVWAKS 179
           W DY+      S  + +AAI G D +VWA+S
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARS 34



 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 328 KVGVHCXKTQQAVVISLYE-EPIQPQQXASVVEKLGXYLITCGY 456
           + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 88  QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  WQDYVDKQLMASRCVTKAAIAGHDXNVWAKS 179
           W DY+      S  + +AAI G D +VWA+S
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARS 34



 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 328 KVGVHCXKTQQAVVISLYE-EPIQPQQXASVVEKLGXYLITCGY 456
           + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 88  QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,445
Number of Sequences: 27780
Number of extensions: 211667
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)