Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060335.seq
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           93   3e-21
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 92.7 bits (220), Expect = 3e-21
 Identities = 41/57 (71%), Positives = 48/57 (84%)
 Frame = +3

Query: 81  MSWQDYVDKQLMASRCVTKAAIAGHDXNVWAKSEGFXISKDXVAKIVAGFENXSLLT 251
           MS QDYVDKQL+ASRCVTKAAIAGHD N+WAKSEGF +SK+ + K+V GFE   +LT
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILT 57



 Score = 83.0 bits (196), Expect = 2e-18
 Identities = 36/44 (81%), Positives = 40/44 (90%)
 Frame = +1

Query: 325 GKVGVHCXKTQQAVVISLYEEPIQPQQXASVVEKLGXYLITCGY 456
           GKVGVHC KT QAVV+SLYE+PIQPQQ ASVVEKLG YL++CGY
Sbjct: 83  GKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 257 GVTIAGTRYIYLXGTDHIIRAXLAR 331
           GVT+AG RYIYL GTD +IRA L +
Sbjct: 60  GVTLAGNRYIYLSGTDRVIRAKLGK 84


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 180 PTL-PTHXHHDRQWQLL*HI 124
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,692
Number of Sequences: 438
Number of extensions: 2742
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)