Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060334.seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 52 1e-07
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 47 2e-06
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 46 4e-06
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 41 1e-04
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 40 4e-04
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 39 8e-04
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 35 0.013
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 33 0.029
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.039
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 31 0.21
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 30 0.36
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.36
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.63
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 29 0.63
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 28 1.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 4.4
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 25 7.8
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 7.8
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 447
Y GL N G TCY NS+LQ+L+F FR+ V + N +++++ L +FY++ Q++
Sbjct: 229 YVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQRE 288
Query: 448 KVGS 459
V +
Sbjct: 289 PVST 292
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 241 VRAVPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY 366
+R + ++GL N+GNTCY +SVL +LY +PFR+ + Y
Sbjct: 31 IRPETLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 388 KETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEELTIT 519
KE + TCL DL+ S++ + G +P++FI LR++ E T
Sbjct: 151 KENIYTCLKDLYCSVSCCDCRYGICSPERFIQVLRRDNEAFRST 194
Score = 32.7 bits (71), Expect = 0.051
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 522 QQDAHEFLNFLINHINEII 578
QQDAHEF NFL+N + E +
Sbjct: 196 QQDAHEFFNFLLNSVTETL 214
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 447
Y GL N G TCY NS+LQ+LY FR V + + + K+++ L FY++ +
Sbjct: 212 YVGLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNE 271
Query: 448 KVGS 459
V +
Sbjct: 272 PVST 275
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 259 NEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA--KNKRTKETLLT--CLADLFY 426
N GL N GNTCY N VLQ L+ C+ +L+ + +N TK L T + F+
Sbjct: 68 NYQPIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFF 127
Query: 427 SIATQ---KKKVGSIAPKKFIARLRKEKEELTI 516
S+ SI+P+ F+ ++ + +I
Sbjct: 128 SLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSI 160
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 39.5 bits (88), Expect = 4e-04
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC---LADLFYSI--AT 438
GL N GNTCY NS LQ L R R+ + KN+ + L +A +F S+ +
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSL 371
Query: 439 QKKKVGSIAPKKFIARLRK 495
+ S AP++F A + K
Sbjct: 372 YSPEHSSFAPRQFKATIGK 390
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 516 YMQQDAHEFLNFLINHINE 572
Y QQD+ EFL FL++ ++E
Sbjct: 398 YGQQDSQEFLAFLLDGLHE 416
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 38.7 bits (86), Expect = 8e-04
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPF 345
G +N GN C+ NS+LQAL +C PF
Sbjct: 134 GFINTGNICFMNSILQALMYCVPF 157
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 522 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENV 638
Q+DA EFLN ++ ++E + ER LK + N ++
Sbjct: 226 QEDAEEFLNLFLDELHEEFVRERRHYLLKNDERNPKSDI 264
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 363
GL N GN CY NS++Q + +P R +L+
Sbjct: 615 GLENTGNLCYLNSLIQYYFIIKPLRNAILD 644
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVL 360
GLVN GNTC+ NSVLQ + P + +L
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLL 154
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 516 YMQQDAHEFLNFLIN 560
Y Q+DAHEF+ +L++
Sbjct: 210 YRQEDAHEFMRYLVD 224
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.1 bits (72), Expect = 0.039
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL+N GNTCY NS +Q L + V ++ + E + ++ +
Sbjct: 101 GLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAE---------YRTLLNSMQSN 151
Query: 454 GSIAPKKFIARLRKE 498
+ P +F+ LR E
Sbjct: 152 APVTPMRFLQSLRME 166
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 30.7 bits (66), Expect = 0.21
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN------KRTKETLLTCLADLFYSIA 435
GL N G TC+ NS LQ L C + + ++ + K TK + L+ +
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLE 268
Query: 436 TQKKKVGSIA---PKKFIARLRK 495
T K G+I+ P F R+
Sbjct: 269 TFYKSDGTISVYRPTTFFGEFRR 291
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 686 HPSRVQCL*GTEPITRHILTGVVLLNF*CALI 591
HP + L G EP+T+ I+ GVV L F CA +
Sbjct: 49 HPE-IASLNGYEPLTKWIVLGVVSLQFTCAYL 79
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQAL 327
GL N GN+CY NS LQ +
Sbjct: 280 GLYNLGNSCYMNSALQCM 297
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPF 345
GL N GN+CY S +Q+L+ + F
Sbjct: 301 GLKNLGNSCYLASTMQSLFSIKEF 324
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 29.1 bits (62), Expect = 0.63
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTC-LADLFYSIATQKK 447
G+ N G TC+ + +LQ++ R + + T +TC + D+F SI K
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKN 205
Query: 448 KVGSIAPKKFIARLRKEKEEL 510
K P + + K + L
Sbjct: 206 KSTFYGPTAVLNLMWKLSKSL 226
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 165 DICNSVLTTYQTNTRFSPPNEGV*NFSTVISRNIIN 58
+I N VL+ Y+T PPN G + I+RN+I+
Sbjct: 590 NIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLIS 625
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 261 VRWNCSDPISLSNCDIFAPILCWKLR 184
+ W+ +P L+ C I + + CW LR
Sbjct: 328 MNWHRQNPDVLATCSIDSSVHCWDLR 353
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 288 WQHLLQQLSVASFIFLSPIQRESIRVQS*E*KDQGNSINMPGRFIL*HSYSKEKSWINC 464
W++ L QLS+ S I LSP IR + +S+ ++ ++ EKS +NC
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNC 416
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 4.4
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 310 SVLQALYFCRPFREKVLEYKAKN--KRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIA 483
++LQ L R K + AKN +R ETL L I+ Q + + + K+
Sbjct: 399 ALLQELESLRVQLSKKVPMPAKNTDERVIETLQRSNELLRMDISMQNEAL--LLRKQEND 456
Query: 484 RLRKEKEELTITCNKMPMNS 543
RL K+ EELT+ N MN+
Sbjct: 457 RLVKQVEELTVALNSGKMNA 476
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 63 INNIPLGNGEAQHNSHDI 10
I+N P+ NG A HN H I
Sbjct: 213 ISNNPIINGAAHHNGHHI 230
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 288 WQHLLQQLSVASFIFLSPIQ 347
W H+ QQ+ + SF L+P Q
Sbjct: 347 WDHITQQIGMFSFTGLTPAQ 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,728
Number of Sequences: 5004
Number of extensions: 54891
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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