Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060334.seq
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 132 2e-31
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 96 2e-20
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 37 0.016
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 37 0.016
U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 37 0.016
AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 36 0.036
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 34 0.11
AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical ... 34 0.11
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 33 0.14
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 33 0.14
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 32 0.33
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 32 0.33
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 32 0.33
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 32 0.33
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 32 0.33
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 32 0.33
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 32 0.33
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 32 0.44
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 32 0.44
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 30 1.8
AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical ... 29 4.1
Z73974-4|CAA98269.1| 481|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY147932-1|AAN39842.1| 481|Caenorhabditis elegans UDP-glucose d... 28 5.4
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 132 bits (320), Expect = 2e-31
Identities = 59/85 (69%), Positives = 74/85 (87%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 NEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYK---AKNKRTKETLLTCLADLFYS 429
NEHY+GLVNFGNTCY NSV+QAL+FCRPFREKVL YK K+ +K+ L+TCLADLF+S
Sbjct: 23 NEHYYGLVNFGNTCYCNSVIQALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLADLFHS 82
Query: 430 IATQKKKVGSIAPKKFIARLRKEKE 504
IA+QK++VG+IAPK+FI +L+KE E
Sbjct: 83 IASQKRRVGTIAPKRFITKLKKENE 107
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 510 DNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE--NVTCN 647
DNYMQQDAHEF N+LIN I+E ++ E+ K ++ + + NVT N
Sbjct: 110 DNYMQQDAHEFFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVN 157
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 95.9 bits (228), Expect = 2e-20
Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 NEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRT---KETLLTCLADLFYS 429
NEHY+GLVN AL+FCRPFREKVL YK K++ K+ L+TCLADLF+S
Sbjct: 23 NEHYYGLVN------------ALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLADLFHS 70
Query: 430 IATQKKKVGSIAPKKFIARLRKEKE 504
IA+QK++VG+IAPK+FI +L+KE E
Sbjct: 71 IASQKRRVGTIAPKRFITKLKKENE 95
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 510 DNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE--NVTCN 647
DNYMQQDAHEF N+LIN I+E ++ E+ K ++ + + NVT N
Sbjct: 98 DNYMQQDAHEFFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVN 145
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 363
G +NFGNTCY N+VLQ L C PF + ++E
Sbjct: 183 GYLNFGNTCYMNAVLQLLGHCSPFTQYLIE 212
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL N G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 194 GLRNQGATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL N G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 194 GLRNQGATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL N G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 194 GLRNQGATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +1
Query: 247 AVPPNEH---YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 369
A+P +E+ Y GLVN TCY NS++Q+LY FR + +++
Sbjct: 77 AIPVDENGHRYVGLVNQAMTCYLNSLVQSLYMTPEFRNAMYDWE 120
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +1
Query: 259 NEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN--------KRTKETLLTCLA 414
N+ GL+N GN CY NS LQ + FR+ + +++ + + + L
Sbjct: 104 NDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPSENFVPPEAPRMNVQATMLALQ 163
Query: 415 DLFYSIAT 438
D+FY++ T
Sbjct: 164 DIFYTLQT 171
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +1
Query: 259 NEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN--------KRTKETLLTCLA 414
N+ GL+N GN CY NS LQ + FR+ + +++ + + + L
Sbjct: 104 NDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPSENFVPPEAPRMNVQATMLALQ 163
Query: 415 DLFYSIAT 438
D+FY++ T
Sbjct: 164 DIFYTLQT 171
>U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical
protein T27A3.2 protein.
Length = 789
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYS 429
Y GLVN G++CY NSVLQAL F+ + ++ ETL+ C D ++
Sbjct: 318 YTGLVNTGSSCYMNSVLQALVTVDSFQTRY------GEQGLETLVNCPLDKLHN 365
>AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 699
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVL 360
G+ N GNTC+ N+VLQAL FRE ++
Sbjct: 379 GMRNVGNTCFMNAVLQALASISEFREYIM 407
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 277 LVNFGNTCYSNSVLQALYFCRP 342
LVN GN+CY NS LQA+ C P
Sbjct: 36 LVNTGNSCYYNSTLQAMSSCGP 57
>AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical
protein Y67D2.2 protein.
Length = 474
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPF 345
GL N GNTCY N++LQ L C F
Sbjct: 46 GLANQGNTCYMNALLQGLASCPSF 69
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 277 LVNFGNTCYSNSVLQALYFCRP 342
LVN GN+CY NS +QA+ C P
Sbjct: 216 LVNTGNSCYYNSTMQAVSSCNP 237
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 277 LVNFGNTCYSNSVLQALYFCRP 342
LVN GN+CY NS +QA+ C P
Sbjct: 216 LVNTGNSCYYNSTMQAVSSCNP 237
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 32.3 bits (70), Expect = 0.33
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQK 444
GL N GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ +
Sbjct: 103 GLANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKD 158
Query: 445 KKVGS 459
+ + S
Sbjct: 159 RALRS 163
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 32.3 bits (70), Expect = 0.33
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQK 444
GL N GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ +
Sbjct: 103 GLANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKD 158
Query: 445 KKVGS 459
+ + S
Sbjct: 159 RALRS 163
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 277 LVNFGNTCYSNSVLQALYFCRPF 345
LVN GN+C+ NS +QAL C F
Sbjct: 147 LVNTGNSCFLNSTMQALSSCHSF 169
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 32.3 bits (70), Expect = 0.33
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE------YKAKNKRTKETLLTCL--ADLFYS 429
GLVN+GN CY N+ +Q L P + L+ K N R + T + A L
Sbjct: 568 GLVNYGNFCYRNAGIQCLARVSPLTQYFLDEDNLDAIKRGNLRRGDAAETTIEYAKLLRE 627
Query: 430 IATQKKKVGSIAPKKFIARLR 492
+ KKK +IAP F +R
Sbjct: 628 MWAAKKK--NIAPNDFNDAIR 646
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 32.3 bits (70), Expect = 0.33
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE------YKAKNKRTKETLLTCL--ADLFYS 429
GLVN+GN CY N+ +Q L P + L+ K N R + T + A L
Sbjct: 571 GLVNYGNFCYRNAGIQCLARVSPLTQYFLDEDNLDAIKRGNLRRGDAAETTIEYAKLLRE 630
Query: 430 IATQKKKVGSIAPKKFIARLR 492
+ KKK +IAP F +R
Sbjct: 631 MWAAKKK--NIAPNDFNDAIR 649
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 32.3 bits (70), Expect = 0.33
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQK 444
GL N GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ +
Sbjct: 103 GLANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKD 158
Query: 445 KKVGS 459
+ + S
Sbjct: 159 RALRS 163
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 32.3 bits (70), Expect = 0.33
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE------YKAKNKRTKETLLTCL--ADLFYS 429
GLVN+GN CY N+ +Q L P + L+ K N R + T + A L
Sbjct: 568 GLVNYGNFCYRNAGIQCLARVSPLTQYFLDEDNLDAIKRGNLRRGDAAETTIEYAKLLRE 627
Query: 430 IATQKKKVGSIAPKKFIARLR 492
+ KKK +IAP F +R
Sbjct: 628 MWAAKKK--NIAPNDFNDAIR 646
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQAL 327
Y GL N GNTC+ N+VLQ L
Sbjct: 422 YTGLRNIGNTCFMNAVLQML 441
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 513 NYMQQDAHEFLNFLINHINE 572
N+ Q DAHEFL+FL++ ++E
Sbjct: 509 NFAQHDAHEFLSFLLDGLHE 528
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL N GNTC+ S Q L P RE L +N ++ L L ++ K +
Sbjct: 276 GLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVGELMKGM 335
Query: 454 -----GSIAPKKF 477
SI P+KF
Sbjct: 336 WSGDYASINPRKF 348
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 277 LVNFGNTCYSNSVLQALYFC 336
L N GN+CY NS +QAL C
Sbjct: 284 LYNTGNSCYFNSTMQALSSC 303
>AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical
protein Y59A8B.2 protein.
Length = 357
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALY 330
GL N GNTC+ ++ LQ L+
Sbjct: 25 GLFNMGNTCFMSATLQCLF 43
>Z73974-4|CAA98269.1| 481|Caenorhabditis elegans Hypothetical
protein F29F11.1 protein.
Length = 481
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 280 VNFGNTCYSNSVLQALYFCRPFR-EKVLEY-----KAKNKRTKETLLTCLADLFYSIATQ 441
V FG +C+ VL +Y C +V +Y N + + +A+LF ++ +
Sbjct: 277 VGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDK 336
Query: 442 KKKVGSIAPKK 474
K + A KK
Sbjct: 337 KIAIFGFAFKK 347
>AY147932-1|AAN39842.1| 481|Caenorhabditis elegans UDP-glucose
dehydrogenase protein.
Length = 481
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 280 VNFGNTCYSNSVLQALYFCRPFR-EKVLEY-----KAKNKRTKETLLTCLADLFYSIATQ 441
V FG +C+ VL +Y C +V +Y N + + +A+LF ++ +
Sbjct: 277 VGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDK 336
Query: 442 KKKVGSIAPKK 474
K + A KK
Sbjct: 337 KIAIFGFAFKK 347
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 283 NFGN-TCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGS 459
+FG C+ N++L L+ REK +E+ +++ KE L + +F K++
Sbjct: 569 SFGQQNCFMNALLNMLFVSATIREKFVEF---HQQRKEKLSAEVGRIFRGNVKSVKRLRH 625
Query: 460 IAPKK 474
+ P +
Sbjct: 626 LLPNR 630
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,206
Number of Sequences: 27780
Number of extensions: 306065
Number of successful extensions: 690
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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