Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060334.seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 122 2e-28
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 119 2e-27
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 47 1e-05
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 43 2e-04
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 42 5e-04
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 41 9e-04
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 40 0.002
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 38 0.005
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 38 0.005
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 38 0.005
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 38 0.006
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 38 0.006
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 38 0.006
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 38 0.008
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 38 0.008
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 36 0.019
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 36 0.019
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 36 0.025
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 36 0.025
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 35 0.044
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 35 0.058
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 34 0.077
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 34 0.077
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 33 0.13
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 33 0.13
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 33 0.18
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 31 0.72
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 31 0.72
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.72
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 30 1.3
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 29 2.2
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 29 2.2
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 28 6.7
At5g08090.1 68418.m00943 hypothetical protein 27 8.8
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 122 bits (294), Expect = 2e-28
Identities = 56/85 (65%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 PPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYS 429
P E YFG NFGNTCY NSVLQALYFC PFRE++LE+ A NK +E LLTCLADLF
Sbjct: 17 PEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQ 76
Query: 430 IATQKKKVGSIAPKKFIARLRKEKE 504
I++QKKK G IAPK+F+ RL+K+ E
Sbjct: 77 ISSQKKKTGVIAPKRFVQRLKKQNE 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 513 NYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENV 638
+YM QDAHEFLN+L+N + EI+ E + + ++S E +
Sbjct: 105 SYMHQDAHEFLNYLLNELVEILEKETQATKADNETSSSPEKI 146
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 119 bits (287), Expect = 2e-27
Identities = 55/87 (63%), Positives = 65/87 (74%), Gaps = 3/87 (3%)
Frame = +1
Query: 253 PPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR---TKETLLTCLADLF 423
P E YFG NFGNTCY NSVLQALYFC PFRE++LEY NK +E L+TCLADLF
Sbjct: 17 PEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLF 76
Query: 424 YSIATQKKKVGSIAPKKFIARLRKEKE 504
I++QKKK G IAPK+F+ RL+K+ E
Sbjct: 77 SQISSQKKKTGVIAPKRFVQRLKKQNE 103
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 513 NYMQQDAHEFLNFLINHINEIILAE-RNQSTLKVQKNNSGENVTCNGFSASQ 665
+YM QDAHEFLN+L+N + +I+ E + T ++S NG Q
Sbjct: 107 SYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQ 158
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 271 FGLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTCLADLFYSIATQKK 447
FGLVN GN+CY+N+VLQ L F RP ++ +K R K C + + I +
Sbjct: 329 FGLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHSKTCRKKSWCFVC--EFEHLILKARG 386
Query: 448 KVGSIAPKKFIARLRK 495
++P K +++L+K
Sbjct: 387 GESPLSPIKILSKLQK 402
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI-ATQKKK 450
GL N G TCY+NS+LQ LY FRE V + + + +L +A LF + A+QK
Sbjct: 107 GLTNLGATCYANSILQCLYMNTAFREGVFSVEV-HVLKQNPVLDQIARLFAQLHASQKSF 165
Query: 451 VGSIA 465
V S A
Sbjct: 166 VDSDA 170
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 507 IDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSG 629
+DN +QQD HEFL L++ + +L ++ VQ SG
Sbjct: 177 LDNGVQQDTHEFLTLLLSLLERCLLHSGVKAKTIVQDLFSG 217
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK-AKNK---RTKETLLTCLADLFYSIATQ 441
GLVN GNTCY NS +Q L + ++ Y+ A+ K +T L +LF +
Sbjct: 160 GLVNLGNTCYMNSTMQCLISVPELKSELSNYQSARTKDVDQTSHMLTVATRELFSEL--- 216
Query: 442 KKKVGSIAPKKFIARLRKE 498
K V ++AP F L+K+
Sbjct: 217 DKSVKAVAPMPFWMVLQKK 235
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GL N GNTC+ NSVLQ L + P L+ A K L + + T ++
Sbjct: 108 GLQNLGNTCFLNSVLQCLTYTEPL-AATLQTAAHQKYCHVAGFCALCAIQKHVRTARQAN 166
Query: 454 GSI-APKKFIARLR 492
G I APK ++ LR
Sbjct: 167 GRILAPKDLVSNLR 180
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNK-----RTKETLLTCLADLFYSIAT 438
GLVN GNTCY NS +Q L + + Y + +T L +LF +
Sbjct: 105 GLVNLGNTCYMNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGEL-- 162
Query: 439 QKKKVGSIAPKKFIARLRKEKEELTITCNKMPM 537
+ V +++P +F LRK+ + + N M M
Sbjct: 163 -DRSVNAVSPSQFWMVLRKKYPQFSQLQNGMHM 194
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 432
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 197 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 252
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 432
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 198 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 253
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 432
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 197 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 252
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 AVPPNEHYF--GLVNFGNTCYSNSVLQALYFCRPF 345
+VPP + + GL+N GN C+ N+ LQAL C PF
Sbjct: 187 SVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPF 221
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 AVPPNEHYF--GLVNFGNTCYSNSVLQALYFCRPF 345
+VPP + + GL+N GN C+ N+ LQAL C PF
Sbjct: 187 SVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPF 221
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 369
GL N GNTCY NSVLQ L F P L +K
Sbjct: 25 GLRNLGNTCYLNSVLQCLTFTPPLANFCLTHK 56
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVL-EYKAKNKRTKETLLTCLADLFYSIATQKKK 450
GL+N GN+C++N V Q L F P L ++ ++ KE TC + + K++
Sbjct: 543 GLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKL--VVKAKEE 600
Query: 451 VGSIAPKKFIARLR 492
++P +++L+
Sbjct: 601 KSPLSPNGLLSQLQ 614
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK-AKNKRTKETLLTCLADLFYSIATQKKK 450
GLVN GN+CY+N+VLQ+L +P +L +++ K+ L C +L + ++
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMC--ELEQHVMMLRES 496
Query: 451 VGSIAPKKFIARLR 492
G ++ + ++ +R
Sbjct: 497 GGPLSASRILSHMR 510
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYSIATQKKK 450
GL N GN C+ N +LQAL C+ FR L++ ++ R + L ++++ ++
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFR-SFLQWVLEDARGSLAGEQEEQLPLTFALSALLQE 133
Query: 451 VGSIAPKKFIARLRKEKEELT 513
+G++ ++ ++ RK LT
Sbjct: 134 LGTVGSRRSVSNPRKVMVTLT 154
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYSIATQKKK 450
GL N GN C+ N +LQAL C+ FR L++ ++ R + L ++++ ++
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFR-SFLQWVLEDARGSLAGEQEEQLPLTFALSALLQE 133
Query: 451 VGSIAPKKFIARLRKEKEELT 513
+G++ ++ ++ RK LT
Sbjct: 134 LGTVGSRRSVSNPRKVMVTLT 154
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 447
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 448 KVG--SIAPKKFIARLRK 495
G S+AP+ F +L +
Sbjct: 364 SSGRNSVAPRAFKTKLAR 381
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 447
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 448 KVG--SIAPKKFIARLRK 495
G S+AP+ F +L +
Sbjct: 364 SSGRNSVAPRAFKTKLAR 381
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLF 423
GLVN GNTC+ NSV+Q L RE L+ ++ L++ L +LF
Sbjct: 203 GLVNLGNTCFFNSVMQNLLSLDQLREHFLK---EDLSVSGPLVSSLKELF 249
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 447
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 305 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 364
Query: 448 KVG--SIAPKKFIARLRK 495
G ++AP+ F +L +
Sbjct: 365 SSGRNAVAPRAFKTKLAR 382
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 363
GL+N GN+C++N +LQ L + RP +LE
Sbjct: 169 GLMNCGNSCFANVILQCLSWTRPLVAYLLE 198
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 363
GL N GN+C++N VLQ L + RP +LE
Sbjct: 175 GLTNCGNSCFANVVLQCLSWTRPLVAYLLE 204
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVL-EYKAK-NKRTKETLLTCLADLFYSIATQKK 447
GL N GNTC+ NS LQ L P E L +Y++ N + + LA F + +
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLW 361
Query: 448 KVG--SIAPKKFIARLRK 495
G ++AP+ F +L +
Sbjct: 362 SSGQNTVAPRAFKTKLAR 379
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 453
GLVN GNTC+ NS++Q L R+ L K L + L LF +
Sbjct: 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL--KENGSGVGGPLASSLRKLFTETKPEAGLK 289
Query: 454 GSIAPKKF 477
I P+ F
Sbjct: 290 SVINPRAF 297
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFR 348
GL N G+TC+ N+VLQAL P R
Sbjct: 178 GLNNLGSTCFMNAVLQALVHAPPLR 202
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 369
GL N GN+C+ NSV Q P E +L ++
Sbjct: 177 GLWNLGNSCFLNSVFQCFTHTVPLIESLLSFR 208
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQALYFCRPFREKVLE--YKAKNKRTKETLLTCLADLFYSIATQKK 447
GL+N GNTC+ NS +Q L F E ++ N + ++ LA F + +
Sbjct: 318 GLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLW 377
Query: 448 KVG--SIAPKKFIARLRK 495
G IAP+ F A+L +
Sbjct: 378 APGRTPIAPRPFKAKLAR 395
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 138 YQTNTRFSPPNEGV*NFSTVISRNIINNIPLGNGEAQHNSHDIT 7
Y +N+ F+PP +GV + ST S + +P GEA + +IT
Sbjct: 235 YPSNSSFAPPLQGVLSSSTE-SEAVPQQVPAAEGEATTTAPEIT 277
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 268 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA 372
Y GLVN GN+CY + +Q ++ F + +++
Sbjct: 307 YTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQS 341
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQAL 327
GL N GNTC+ NS LQ L
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 274 GLVNFGNTCYSNSVLQAL 327
GL N GNTC+ NS LQ L
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 QQDAHEFLNFLINHINEIILAERNQ-STLKVQKNNSGENVTCNGFSAS 662
Q+DAHEFL ++ + L +NQ ++ Q N +NV G ++
Sbjct: 249 QEDAHEFLQSFLDKLERCCLDPKNQLGSVSSQDLNIVDNVFGGGLMST 296
>At5g08090.1 68418.m00943 hypothetical protein
Length = 322
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 88 EVLNAFVRW*KSSVCLISRKNRIANVNMSGFWP*FP 195
E+L + W KS + +++ I V M FWP +P
Sbjct: 14 EILRLALGWTKSEIYVLTMHWLIVGVEMYLFWPLYP 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,836
Number of Sequences: 28952
Number of extensions: 274978
Number of successful extensions: 652
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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