Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060333.seq
(687 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 107 3e-22
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 105 8e-22
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 105 8e-22
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 94 2e-18
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 93 4e-18
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 93 6e-18
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 87 3e-16
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 87 3e-16
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 87 4e-16
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 85 2e-15
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 83 5e-15
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 83 6e-15
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 83 6e-15
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 76 7e-13
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 72 1e-11
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 69 1e-10
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 66 1e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 50 5e-05
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 45 0.002
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 45 0.002
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 41 0.025
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 40 0.057
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 38 0.23
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 36 0.70
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 35 1.6
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 35 2.1
UniRef50_UPI000023E82F Cluster: hypothetical protein FG01599.1; ... 33 4.9
UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacill... 33 6.5
UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3; ... 33 6.5
UniRef50_UPI0000EBE356 Cluster: PREDICTED: hypothetical protein;... 33 8.6
UniRef50_Q3JIK9 Cluster: Putative uncharacterized protein; n=2; ... 33 8.6
UniRef50_Q0DBX3 Cluster: Os06g0517400 protein; n=8; Oryza sativa... 33 8.6
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 107 bits (257), Expect = 3e-22
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AVARIPRVRGGGTHRSG GAFG MCRGGRMF P ++ RRWHRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKT-WRRWHRRV 115
Score = 46.4 bits (105), Expect = 7e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P VFK PIRP +VN VH ++ KN+RQPY V
Sbjct: 25 PAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 105 bits (253), Expect = 8e-22
Identities = 49/59 (83%), Positives = 50/59 (84%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AVARIPRVRGGGTHRSG GAFG MCRGGRMF P + RRWHRRV
Sbjct: 175 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK-VFRRWHRRV 232
Score = 39.5 bits (88), Expect = 0.075
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P VF+ P+RP +V+ VH + KN RQPY V
Sbjct: 142 PGVFRAPLRPDIVSFVHDQIRKNKRQPYAV 171
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 105 bits (253), Expect = 8e-22
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AVARIPRVRGGGTHRSG GAFG MCRGGRMF P ++ RRWHR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKT-FRRWHRKV 118
Score = 41.5 bits (93), Expect = 0.019
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P VFK PIRP +VN+VH + +N+RQ Y V
Sbjct: 28 PAVFKAPIRPDVVNEVHQLLRRNNRQAYAV 57
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 94.3 bits (224), Expect = 2e-18
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +3
Query: 225 TRGSPTA*XGAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRS 404
T+ + T AG QTSAESWGTG AVARIPRV GGGTHR+G AFG MCR GRMF P +
Sbjct: 24 TKDTLTVPNKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTK- 82
Query: 405 PGRRWHRRV 431
R+WH+++
Sbjct: 83 VWRKWHQKI 91
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 93.5 bits (222), Expect = 4e-18
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AVARIPRV GGGTHR+G AFG MCR GRMF P + R+WH+++
Sbjct: 57 AGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTK-VWRKWHQKI 114
Score = 46.0 bits (104), Expect = 9e-04
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = +2
Query: 152 PFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P P VF PIRP +V VH M+KN RQPY V
Sbjct: 22 PLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAV 53
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 93.1 bits (221), Expect = 6e-18
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
GAG +TSAESWGTG AVARIPRV GGGTHR+G AFG MCRGG MF P + RRW R++
Sbjct: 57 GAGYETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKI-WRRWGRKI 115
Score = 33.9 bits (74), Expect = 3.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P VF+ PIR L+ + +MSKN R PY V
Sbjct: 25 PVVFQTPIRHDLIEYIFSNMSKNIRHPYAV 54
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/59 (66%), Positives = 44/59 (74%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
+G SA SWGTG AVARIPR+ GGGT SG GAFG MCRGGRMF P + RRWHR++
Sbjct: 57 SGMNHSAHSWGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKI-FRRWHRKI 114
Score = 42.7 bits (96), Expect = 0.008
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 152 PFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
P P VF PIR +V VH +M+KNSRQ Y V R
Sbjct: 22 PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNR 55
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 87.4 bits (207), Expect = 3e-16
Identities = 45/77 (58%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRVK 434
AG Q SAESWGTG AVARIPRV GT RSG GAFG MCRGG MF P ++ RR+HR++
Sbjct: 59 AGHQHSAESWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKT-YRRFHRKIN 117
Query: 435 XPT---AESGPFAATVC 476
A + AAT C
Sbjct: 118 TTEKRHAVAAAIAATGC 134
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 152 PFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P P VF P+R LV V +MSKN RQ Y V
Sbjct: 24 PLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGV 55
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 87.0 bits (206), Expect = 4e-16
Identities = 45/79 (56%), Positives = 49/79 (62%)
Frame = +3
Query: 195 SMMFTFLCPRTRGSPTA*XGAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCR 374
S + T + R + AG Q SAESWGTG AVARIPRV G GTHRSG AFG CR
Sbjct: 39 SFVHTNIAKNRRQAHAVNPQAGMQHSAESWGTGRAVARIPRVSGSGTHRSGQAAFGNQCR 98
Query: 375 GGRMFRPQRSPGRRWHRRV 431
GRM P + RRWHRRV
Sbjct: 99 KGRMSLPIK-VWRRWHRRV 116
Score = 39.1 bits (87), Expect = 0.099
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 152 PFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
P P VF+ PIRP +V+ VH +++KN RQ + V
Sbjct: 24 PLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAV 55
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 84.6 bits (200), Expect = 2e-15
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
+G QTSA SWGTG A+AR+PRV+GGGTHR+G A+ CR G M+ P R RRWHR+V
Sbjct: 57 SGYQTSARSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTR-VWRRWHRKV 114
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 137 RVQPSPFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
RV + P VF P+R LV VH +MSKN RQ Y V +
Sbjct: 17 RVGATLMPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSK 55
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 83.4 bits (197), Expect = 5e-15
Identities = 38/71 (53%), Positives = 47/71 (66%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRVK 434
AG TSA SWGTG AV+R+PRV G GTHRSG GA CRGGR+F P + R+WH ++
Sbjct: 53 AGMGTSAVSWGTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNP-TTIWRKWHHKIN 111
Query: 435 XPTAESGPFAA 467
+S F+A
Sbjct: 112 KNQRKSAIFSA 122
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 83.0 bits (196), Expect = 6e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
+G QTSA SWGTG A++R PRV+GGGTHRSG A+ CR G MF P R+ R WHR++
Sbjct: 57 SGYQTSARSWGTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRT-WRHWHRKI 114
Score = 39.1 bits (87), Expect = 0.099
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 137 RVQPSPFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
R+ + P VF P+R LV+ VH +MSKN RQ Y + R
Sbjct: 17 RMGSTIMPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISR 55
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 83.0 bits (196), Expect = 6e-15
Identities = 39/70 (55%), Positives = 47/70 (67%)
Frame = +3
Query: 222 RTRGSPTA*XGAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQR 401
+TR AG Q SAESWGTG A+AR+PRV+GGGT R+G GAF CR GRM P +
Sbjct: 44 KTRQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTK 103
Query: 402 SPGRRWHRRV 431
+ RRW R+V
Sbjct: 104 T-HRRWARKV 112
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 76.2 bits (179), Expect = 7e-13
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG Q SAESWGTG AVAR+PR+ G GT R+G AF RGG M+ P + RRWHR V
Sbjct: 58 AGHQHSAESWGTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLK-VWRRWHRMV 115
Score = 33.5 bits (73), Expect = 4.9
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +2
Query: 176 PIRPXLVNDVHVSMSKNSRQPY 241
PIRP +V+ VH++++KN RQP+
Sbjct: 31 PIRPDVVHFVHMNLAKNERQPF 52
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRR 428
AG Q SA SWGTG AVARIPR+ G G+ R+G GAFG M R G MF P ++ R+W R+
Sbjct: 58 AGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKN-FRKWQRK 114
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWH 422
+G Q SA+SWG G +ARIPR++G GT ++G GA MCRGGR+F R+ ++W+
Sbjct: 59 SGNQVSAKSWGPGRGLARIPRIKGSGTRKAGQGALANMCRGGRLF-GNRNYSKKWN 113
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG + SA SWGTG A A +PRV G G++R+G GA+ CRGG F P + RRW R V
Sbjct: 55 AGKKVSAISWGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPP-TLLRRWFRPV 112
Score = 33.5 bits (73), Expect = 4.9
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPY 241
P VF PIR +V +V+V+++KN++QP+
Sbjct: 22 PKVFDTPIRAEVVKEVYVNLAKNAQQPH 49
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 50.0 bits (114), Expect = 5e-05
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG Q +A SWG G AVAR+PR G G GA+ RGG M P + RRW R+V
Sbjct: 54 AGVQCTAHSWGPGRAVARLPRKHG------GIGAYANFARGGHMAHP-TTVIRRWCRKV 105
Score = 37.5 bits (83), Expect = 0.30
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 137 RVQPSPFPFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
+V P P VF P+RP ++N VH + K R PY V R
Sbjct: 14 QVAELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSR 52
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGG 332
AG QTSAESWGTG A +PRVRGGG
Sbjct: 48 AGYQTSAESWGTGRARGPMPRVRGGG 73
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG +TSAESWG G VA +PRV+G +G A GG+ +P + W +RV
Sbjct: 52 AGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAP-TPEKDWTQRV 109
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 41.1 bits (92), Expect = 0.025
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +3
Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQR 401
GAG + S ES+G G +ARIPR +G R G F RGGR P +
Sbjct: 77 GAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPK 123
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 39.9 bits (89), Expect = 0.057
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQR 401
AG +TSA S G G VAR+PR++G S A M RGGR P R
Sbjct: 65 AGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPR 108
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 37.9 bits (84), Expect = 0.23
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQR 401
AG +T+AES+G+G A +PRV+G S AF GGR P R
Sbjct: 53 AGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPR 96
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 36.3 bits (80), Expect = 0.70
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 255 AGXQTSAESWG--TGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQR 401
AG SA+S TG ARI R++GGG R G RGGR P +
Sbjct: 52 AGMDVSADSLNPPTGHGQARIARMKGGGGRRRGEAGEVASIRGGRQAHPPK 102
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.1 bits (77), Expect = 1.6
Identities = 25/59 (42%), Positives = 27/59 (45%)
Frame = +3
Query: 216 CPRTRGSPTA*XGAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFR 392
CP R P GA AE + T AR PR GGG HR GA G + RGG R
Sbjct: 177 CPCRRPHPP---GA-PHAEAEPF-TAPLRARRPRAAGGGKHRGAHGANGGVARGGAEHR 230
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRP 395
AG +TSAES+G +AR+PRV+ SG A GGR+ P
Sbjct: 59 AGKRTSAESFGINLGMARVPRVK-----NSGEAALAPNTVGGRLAFP 100
>UniRef50_UPI000023E82F Cluster: hypothetical protein FG01599.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01599.1 - Gibberella zeae PH-1
Length = 1347
Score = 33.5 bits (73), Expect = 4.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 396 GGETYVHHD-TFYRRHXDRTYEYHHHGHAEFGRQXVRYPMIRH 271
G Y H+D +Y +H D + HHHG +G + H
Sbjct: 474 GHHNYDHNDYNYYHKHHDNKHYDHHHGDKHYGHHHEHHKHYEH 516
>UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacillus
anthracis
Length = 265
Score = 33.1 bits (72), Expect = 6.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 408 QGFVGGETYVHHDTFYRRHXDRTYEYHHHGHAEFGRQXVRY 286
QG G + + HH + H + HHHGH Q + Y
Sbjct: 144 QGHHGHQGHHHHQGHHGHHGHHQQQVHHHGHHHIHPQAILY 184
>UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3;
Proteobacteria|Rep: Putative uncharacterized protein -
Methylobacterium sp. 4-46
Length = 1338
Score = 33.1 bits (72), Expect = 6.5
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Frame = +3
Query: 132 GAGCSQAPSRS---CSRGPYVRXWSMMFTFLCPRTRGSPTA*XGAGXQTSAESWGTGXAV 302
G G +Q P R C+RG + R + L ++R G + G +
Sbjct: 462 GLGHAQPPDRDRGGCARG-FPRAAGSLHAHLRAQSRDGADPGGRRGDRRHRRLLAGGPSA 520
Query: 303 AR-IPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPG---RRWHRR 428
AR R GG G GA RGG PQR PG RR HRR
Sbjct: 521 ARGRGRDAGGARAHGGRGAAAPRRRGGAA-PPQRDPGDAGRRAHRR 565
>UniRef50_UPI0000EBE356 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 220
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGG 380
G G +T+ + G G AR+P RGG RSG GA G+ R G
Sbjct: 109 GGGRETATRAGGGGPRSARVPGCRGGARSRSG-GA-GRRGREG 149
>UniRef50_Q3JIK9 Cluster: Putative uncharacterized protein; n=2;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 792
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +3
Query: 303 ARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRVKXPTAESGPFA 464
A + RGG HR G + RGGR R P RR R + + P A
Sbjct: 514 AAVRHRRGGRGHRHGGRRQRRRARGGRARHVHRQPARRVQHRARDARRQPDPAA 567
>UniRef50_Q0DBX3 Cluster: Os06g0517400 protein; n=8; Oryza sativa
(japonica cultivar-group)|Rep: Os06g0517400 protein -
Oryza sativa subsp. japonica (Rice)
Length = 375
Score = 32.7 bits (71), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 321 RGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRVKXPTAESG 455
R GG R G G G+ C GGR + + G+R + AE+G
Sbjct: 193 RSGGRRRRGSGGRGRRCSGGRRAKRRGGRGQRGCGEAEGGGAEAG 237
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,619,879
Number of Sequences: 1657284
Number of extensions: 14591208
Number of successful extensions: 38104
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 35512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37825
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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