Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060333.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          101   7e-22
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   101   7e-22
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    29   2.6  
02_04_0457 + 23093020-23093343,23093798-23093806                       29   2.6  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    29   2.6  
06_01_1010 + 7866158-7866661                                           29   3.5  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    29   4.6  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   6.0  
07_01_0561 + 4171812-4172144,4173468-4174253                           28   8.0  
06_03_0997 - 26740073-26740305,26740913-26741000                       28   8.0  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   8.0  
06_01_0283 + 2083627-2084334,2085759-2085986                           28   8.0  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   8.0  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  101 bits (241), Expect = 7e-22
 Identities = 45/59 (76%), Positives = 50/59 (84%)
 Frame = +3

Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
           AG QTSAESWGTG AV+RIPRV GGGTHR+G GAFG MCRGGRMF P ++  R+WHRRV
Sbjct: 62  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKT-WRKWHRRV 119



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 164 VFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
           VF+ P+RP +V  VH  +S N RQPY V R
Sbjct: 31  VFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  101 bits (241), Expect = 7e-22
 Identities = 46/59 (77%), Positives = 49/59 (83%)
 Frame = +3

Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
           AG QTSAESWGTG AV+RIPRV GGGTHR+G GAFG MCRGGRMF P +   RRWHRRV
Sbjct: 61  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKI-WRRWHRRV 118



 Score = 35.5 bits (78), Expect = 0.040
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
           P V + PIRP +V   H  +S N RQPY V R
Sbjct: 28  PQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 513 EGQHLFEKEFPETFPWVVSRXKFQEXQTRPKQ 608
           E + L  KEFPE + WV  +  +Q+ +T+  Q
Sbjct: 352 EARKLLYKEFPEHYRWVAGKNVWQKRKTKTCQ 383


>02_04_0457 + 23093020-23093343,23093798-23093806
          Length = 110

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 258 GXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGK 365
           G + S   W  G A A    VRGGG  RSG G  G+
Sbjct: 76  GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEGR 110


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 513  EGQHLFEKEFPETFPWVVSRXKFQEXQTRPKQ 608
            E + L  KEFPE + W++ +  +Q+ +T+  Q
Sbjct: 928  EARKLLYKEFPEHYRWIIGQNVWQKRKTQRGQ 959


>06_01_1010 + 7866158-7866661
          Length = 167

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
           G G Q +    GT  A  +   + GGG    G G        GR +RP+    RR  RR 
Sbjct: 40  GGGGQRAEGRGGTADARRKEAGMPGGGARAPGSGK-------GRRWRPEHGGKRRHRRRT 92

Query: 432 -KXPTAESGPFAATV 473
            +    E G  A TV
Sbjct: 93  GRKEGGEPGVGAVTV 107


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 378 HHDTFYRRHXDRTYEYHHHGHAEFGRQXVRYPMIRH 271
           HH  + + H  + YE+ +  H +  RQ  +Y   +H
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +3

Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
           G G +    + G   A   + RVRGG   + G     +  + G   R   +  R WHRR 
Sbjct: 61  GVGGRERGAAGGQQGAEPAVRRVRGGVGGQQGARPQRRRRQDGAAVRAGDARQRPWHRRQ 120

Query: 432 KXP 440
             P
Sbjct: 121 GGP 123


>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 304 ATAXPVPHDSALVWXPAPXHAVGLPRVLGHRNV-NIIDQXRTYG 176
           A +     +S +VW P     V LPR   H N  + + Q  TYG
Sbjct: 69  AVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYG 112


>06_03_0997 - 26740073-26740305,26740913-26741000
          Length = 106

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 368 VSWWT--YVSPPTKPWAALASSRQTSDSGER 454
           ++WW    V+P  + W A+A++R  + +GER
Sbjct: 1   MAWWRARVVAPVRRAWLAVAAARARARNGER 31


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +3

Query: 192 WSMMFTFLCPRTRGSPTA*XGAGXQTSAESWGTGXAVARIPRVRGGGTHR 341
           WS ++TF C R+  S     G G      S   G    R+        HR
Sbjct: 14  WSKLYTFACFRSSHSNNEAAGGGPAAEGGSAVGGPGFTRVVHCNNSAVHR 63


>06_01_0283 + 2083627-2084334,2085759-2085986
          Length = 311

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 417 WHRRVKXPTAESGPFAATVCCYRRSQQLRSG*EGQHLFEKEFPETFPWV 563
           WH R     +E GP A+ V   RR+   R   EG++  E+   E  P++
Sbjct: 79  WHLRRLRAASEGGPSASRVRNRRRAYLDRLVREGEYFSEEAMREREPYL 127


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 426 DDANAAQGFVGGETYVHHDTFYRRHXDRTYEYHHHGH 316
           DD  A +    G  + HH     RH     ++HHH H
Sbjct: 522 DDYRARRRHQKGRHHRHHHDHRHRHGHSHGDHHHHYH 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,722,838
Number of Sequences: 37544
Number of extensions: 446519
Number of successful extensions: 1373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)