Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060333.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 102 2e-22
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 34 0.12
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 30 2.0
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 29 2.7
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 29 2.7
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 2.7
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 29 2.7
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 29 3.5
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 29 3.5
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_51278| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 6.2
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 8.1
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 102 bits (245), Expect = 2e-22
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AVARIPRVRGGGTHRSG GAFG MCRGGRMF P ++ R+WH +V
Sbjct: 55 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKT-WRKWHTKV 112
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
P VFK PIRP LVN VH +++KN RQPY V +
Sbjct: 22 PAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 219 PRTRGSPTA*XGAGXQTSAESWGTGXAVARIPR-VRGGGTHRSGXGAFGKMCRGGR 383
P R SP+ T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 967 PSHRSSPSTPGSPSIPTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = +3
Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHR 425
G Q WG G + R GGG R G +G+M +GG M R PG W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRM-QGGGM---GRGPGGGWGR 66
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +3
Query: 282 WGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRP----QRSPGRRWHR 425
WG G R++GGG R G +G+M GG P R PG W R
Sbjct: 40 WGRGSG-GGWGRMQGGGMGRGPGGGWGRMQGGGMGRGPGGGLGRGPGGGWGR 90
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = +3
Query: 252 GAGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHR 425
G Q WG G + R GGG R G +G+M +GG M R PG W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRM-QGGGM---GRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 378 HHDTFYRRHXDRTYEYHHH 322
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 378 HHDTFYRRHXDRTYEYHHHGHAEFGRQ 298
HH RH R + +HHH H E+ R+
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRR 350
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 384 YVHHDTFYRRHXDRTYEYHHHGH 316
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 378 HHDTFYRRHXDRTYEYHHH 322
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 384 YVHHDTFYRRHXDRTYEYHHH 322
Y H+D +Y H Y+YH+H
Sbjct: 299 YYHYDYYYHYHYYYYYDYHYH 319
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 553 KVSGNSFSNKCCPS*PERSCWERR*QQTVAAKGPLSAVGXLTRR 422
+ GNS S+K C S R+CWE R + + L+ G RR
Sbjct: 206 RFQGNSQSSKYCISAKLRNCWEGRSVRASSLLRQLAKGGCAARR 249
>SB_51278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 208 VNIIDQXRTYGPLEHEREGAWLHPAPSRSFLNTPTLKVGLPID 80
V +++Q YG H++ G P S S P+ LP D
Sbjct: 454 VKLVEQNPRYGEWRHKKPGYEWRPKKSGSLAKEPSTAPSLPCD 496
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 158 GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1307
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 354 AFGKMCRGGRMFRPQRSPGRRWHR 425
AF + +GGR +P+++P RWHR
Sbjct: 642 AFESIFKGGR--QPEKTPNGRWHR 663
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 378 HHDTFYRRHXDRTYEYHHHGH 316
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 378 HHDTFYRRHXDRTYEYHHHGH 316
HH + H + YHHH H
Sbjct: 229 HHHNHHHHHHHHYHHYHHHHH 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,709,787
Number of Sequences: 59808
Number of extensions: 463411
Number of successful extensions: 1250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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