Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060333.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   3e-21
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    29   3.1  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    28   5.4  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.2  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 46/59 (77%), Positives = 47/59 (79%)
 Frame = +3

Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
           AG Q SAESWGTG AVARIPRVRGGGTHRSG GAFG MCRGG MF P +   RRWHR V
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK-VFRRWHRNV 114



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCV 247
           P VF+ PIRP LV+ +   + +N RQ + V
Sbjct: 24  PAVFRTPIRPDLVSFIADQVRRNRRQAHAV 53


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -1

Query: 405 GFVGGETYVH----HDTFYRRHXDRTYEYHHHGH 316
           GFV G   VH    HD  +++H  + ++ HHHGH
Sbjct: 107 GFVPGGVDVHDDHHHDGHHKKHGRKEHD-HHHGH 139


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -1

Query: 492 GNAGSS--KRLPQKARSPLSXV*RDDANAAQGFVGGETYVHHDTFYRRHXDRTYEYHHHG 319
           GN GS   +R  +   S      R D      + GG    H +++ RR  DR++   +HG
Sbjct: 27  GNGGSDAGQRRREDHNSSYQSYRRPDGRQ-DSYGGGHQGNHGNSYGRREDDRSHSRDNHG 85

Query: 318 HAEFGRQXVR 289
            + +G +  R
Sbjct: 86  GSRYGERDDR 95


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 171


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 296


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 221


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 234


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 248


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPVRVQGAHTSG 189
           SS+    V++ L++ Y +K E        +P  VQG  TSG
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSG 295


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 396 GGETYVHHDTFYRRHXDRTYEYHHHGH 316
           GG    HH   Y  H +  + + HHGH
Sbjct: 59  GGHHGGHHGGHYESHYESHHHHGHHGH 85


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 232 PRVLGHRNVNIIDQXRTYGPLEHE-REGAWLHPAPSRSFLNTPTLKVGLPIDSFRYFSEA 56
           PR        IID   +YG L +E R  +   P  S   ++ P   + L   +F   +  
Sbjct: 277 PRAYHRETEEIIDDTASYGDLRNESRMNSPHRPGLSNRNMSQPVSGISLLSQTFLEQNLP 336

Query: 55  IPPKYT 38
            PPK+T
Sbjct: 337 EPPKFT 342


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 324  GGGTHRSGXGAFGKMCRGGRMFRP 395
            GGG  R G G+   M RGGR+ RP
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 324  GGGTHRSGXGAFGKMCRGGRMFRP 395
            GGG  R G G+   M RGGR+ RP
Sbjct: 2157 GGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 110 CIQKRARRCRVQPSPFPFVFKGPIR-PXLVNDVHVSMSKNSRQPYCVXRSWXPNQCRIMG 286
           C   R   C    +P P VF   ++ P  V+ V   M KNS+      +   P+Q R+  
Sbjct: 350 CKSNRKYFCYDCRTPMPGVFTPTVKLPCAVDIVKHPMEKNSKSSALHCKIVAPDQTRVFD 409

Query: 287 Y 289
           Y
Sbjct: 410 Y 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,745
Number of Sequences: 27780
Number of extensions: 330945
Number of successful extensions: 779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)