Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060333.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
 Frame = -1

Query: 378 HHDTFYRRHXD-RTYEYHHHGHA 313
           HH T    H       +HHH HA
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHA 437


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 565 TTQGKVSGNSFSNKCCPS*PERS 497
           T   KVS + +SN C  S  +RS
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRS 29


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 565 TTQGKVSGNSFSNKCCPS*PERS 497
           T   KVS + +SN C  S  +RS
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRS 29


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -1

Query: 390 ETYVHHDTFYRRHXDRTYEYHHHGHAEFGRQXVRYPMIRHWF 265
           E Y H   FY R      + H    A +G + ++    ++WF
Sbjct: 6   EHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWF 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,685
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)