Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060333.seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 99 3e-21
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 99 3e-21
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 30 1.7
At4g36980.1 68417.m05240 expressed protein 29 2.9
At5g43840.1 68418.m05360 heat shock transcription factor family ... 28 5.0
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 27 8.8
At3g22830.1 68416.m02877 heat shock transcription factor family ... 27 8.8
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 8.8
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AV+RIPRV GGGTHR+G AFG MCRGGRMF P + RRWHRRV
Sbjct: 64 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKI-WRRWHRRV 121
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
P V P+RP +VN VH +S NSRQPY V +
Sbjct: 31 PDVMTAPVRPDIVNFVHAQISNNSRQPYAVSK 62
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 255 AGXQTSAESWGTGXAVARIPRVRGGGTHRSGXGAFGKMCRGGRMFRPQRSPGRRWHRRV 431
AG QTSAESWGTG AV+RIPRV GGGTHR+G AFG MCRGGRMF P + RRWHRRV
Sbjct: 63 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKI-WRRWHRRV 120
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 158 PFVFKGPIRPXLVNDVHVSMSKNSRQPYCVXR 253
P V P+RP +VN VH +S NSRQPY V +
Sbjct: 30 PDVMTAPVRPDIVNFVHAQISNNSRQPYAVSK 61
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = -1
Query: 420 ANAAQGFVGGETYVHHDTFYRRHXDRTYEYHHHGHAEF 307
A G HH Y H Y Y +HGH +F
Sbjct: 108 AGGVAAAAGAHHMSHHHGHYGHHHGHGYGYGYHGHGKF 145
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 480 SSKRLPQKARSPLSXV*RDDANAAQGFVGGETYVHHDTFYRRHXDRTYE 334
S K+L +K R +S + RD VG + +HHD + TYE
Sbjct: 251 SIKKLSRKERRKVSRIERDRERETSRSVGRQI-IHHDPYRESRRSPTYE 298
>At5g43840.1 68418.m05360 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 282
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 283 HDSALVWXPAPXHAVGLPRVLGHRNV-NIIDQXRTYG 176
++S +VW P + LPR H N + + Q TYG
Sbjct: 43 NNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYG 79
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 664 LKGLSDQCLXXRLQER*TPCFGLV*XSWNFXRLTTQGKVSGNSFSNK 524
L+GLS + ++ E PCF SW+ + T Q GNS+ K
Sbjct: 692 LEGLSPKVPLYKITEGNEPCFFTTYFSWDSTKATVQ----GNSYQKK 734
>At3g22830.1 68416.m02877 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 406
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 283 HDSALVWXPAPXHAVGLPRVLGHRNV-NIIDQXRTYG 176
++S +VW P LPR H N + + Q TYG
Sbjct: 85 NNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYG 121
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 315 RVRGGGTHRSGXGAFGKMCRGGRMFR 392
R +GGG + G G+ G CR G +R
Sbjct: 98 RYQGGGGRQGGGGSGGSYCRHGCCYR 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,596
Number of Sequences: 28952
Number of extensions: 317537
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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