Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060332.seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.2  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   3.9  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   3.9  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    25   6.8  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   6.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.0  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   9.0  

>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 23  ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEK 118
           +N  KP + YN DY  E  K  F T+ ++ ++
Sbjct: 52  SNCSKPLVGYNSDYLDEHAKDGFRTSVIVRQR 83


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 226 QQRKFVFASVVFWQAIIKKIRKQFSASI 143
           Q+R F+++ ++ W A+ + +R  F+ S+
Sbjct: 437 QERNFLYSKIMLWVALDRALRIAFTRSL 464


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 89  FHTNKVIFEKLDPYATNINRCRKL 160
           F    V+FE L P+ TN+ R  KL
Sbjct: 518 FSLGMVLFELLHPFQTNMERATKL 541


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 159 NFLHLLIFVAY 127
           NFLHLLIF AY
Sbjct: 228 NFLHLLIFTAY 238


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 283 VSDQSRWLEINQFSAWERRDNQYAHKWXIKVXGADMGQQILFIIKQ 420
           V  Q+R L+  + S W   D +  + W   + G      +LF+  +
Sbjct: 136 VDPQARRLQEEELSPWIMEDFEGKNTWVSTMEGGQSSAYVLFMFSE 181


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 345 IVSSFPSGKLIDLEP 301
           +VSSFP+  +IDL+P
Sbjct: 37  LVSSFPNDSIIDLQP 51


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 41  FLFYNEDYY--CEKPKRYFHTNKVIFEKLDPYATNIN 145
           FL Y   YY      ++Y  T K I +K+DPY  +I+
Sbjct: 209 FLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSIS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,745
Number of Sequences: 5004
Number of extensions: 38395
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)