Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060332.seq
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)                  29   2.3  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.1  
SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 277 TAVSDQSRWLEINQFSAWERRDNQYAHKWXIKVXGADMGQQILF 408
           T +S  S WL  + F  WE R   + H W      +D   ++ F
Sbjct: 740 TQLSASSHWLNSSSFGPWEARLGNHPHGWVTDPADSDPWLKVKF 783


>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 168 SVSNFLHLLIFVAYGSSFSKITLFV 94
           S S   H+ IFVAYGSS  KI L V
Sbjct: 451 SASKKAHVFIFVAYGSSIRKIMLNV 475


>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 44  LFYNEDYYCEKPKRYFHTNKV--IFEKLDPYATNINRC-RKLLTD 169
           L+YN   Y     RYFH   V   +E+L  Y     +C R+LLTD
Sbjct: 476 LYYNSTLYDSLHARYFHWRIVNHRYERLSVYKPTAVQCIRQLLTD 520


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 183  ACQNTTDAKTNLRCCF 230
            ACQ  TD K N +CCF
Sbjct: 4920 ACQKDTDCKNNHKCCF 4935


>SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 66  IVRSPNVIFIQTK*FLKNSIRTQRILIDAEN 158
           +VR PN+I +    FLKNS+     LID +N
Sbjct: 348 LVRYPNIIQLMWVSFLKNSVYIISELIDGKN 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,753,081
Number of Sequences: 59808
Number of extensions: 278972
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)