Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060331.seq
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P34050 Cluster: 43 kDa protein; n=5; Nucleopolyhedrovir...   165   9e-40
UniRef50_A7AD16 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A6LE63 Cluster: Dipeptidyl aminopeptidase; n=2; Bactero...    33   6.5  

>UniRef50_P34050 Cluster: 43 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: 43 kDa protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 363

 Score =  165 bits (401), Expect = 9e-40
 Identities = 82/106 (77%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
 Frame = +3

Query: 264 SSALTAVS-DQSRWLEINQFSAWERRDNQYAHKWLIKVAGADMGQQILFIXKQVTXKFKT 440
           +SALT VS DQ RWLEINQFS WE+RDNQYAHKWLIKV GADMGQQILFI KQVT KFKT
Sbjct: 85  ASALTTVSNDQCRWLEINQFSGWEQRDNQYAHKWLIKVVGADMGQQILFIIKQVTKKFKT 144

Query: 441 CNLGFHNYYKLFRRXLSX*LFXTQEVF*NACX*ILKAAMXVXNKGV 578
           CNLGFHNYYKLFRR LS  LF  +EVF      ILKAAM V  KGV
Sbjct: 145 CNLGFHNYYKLFRRCLSILLFKHKEVFVQCLQVILKAAMPVKKKGV 190



 Score =  161 bits (390), Expect = 2e-38
 Identities = 72/81 (88%), Positives = 73/81 (90%)
 Frame = +1

Query: 10  MDKRANSRKPFLFYNEXYXCEKPKRYFHTNKVIFEKLDPXATNINXCRKLXTDFFDYCLP 189
           MDKRANSRKPFLFYNE Y CEKPKRYFHTNKVIFEKLD  ATNIN CR+L TDFFDYCLP
Sbjct: 1   MDKRANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLDSYATNINRCRELLTDFFDYCLP 60

Query: 190 KYYRRKNKFALLXRLLEPVIK 252
           KYYRRKNKF LL RLLEPVIK
Sbjct: 61  KYYRRKNKFTLLFRLLEPVIK 81



 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +2

Query: 521 LKCLXVDFKSRXXRXEQGRVQSNYAFAVXNALXXYLVDXPHLFXAKDI 664
           ++CL V  K+     ++G V+SNYAFAV NAL  Y+VD PHL   KDI
Sbjct: 172 VQCLQVILKAAMPVKKKGVVKSNYAFAVTNALHYYIVDNPHLL-CKDI 218


>UniRef50_A7AD16 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides merdae ATCC 43184|Rep: Putative
           uncharacterized protein - Parabacteroides merdae ATCC
           43184
          Length = 769

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 201 TQKQICAAVSSFRTRNQTTGTSSALTAVSDQSRWLEINQFSAWERRDNQYAHKWLIKVAG 380
           T K   A + S   +N  T T +A    +D  +WL+ N +  WE   N + H + I   G
Sbjct: 334 TNKVWIARIGSPTPQNIFTDTDAAWLDTNDNIQWLKDNTWFTWESERNGWRHLYRISRDG 393

Query: 381 ADM 389
            ++
Sbjct: 394 KEI 396


>UniRef50_A6LE63 Cluster: Dipeptidyl aminopeptidase; n=2;
           Bacteroidales|Rep: Dipeptidyl aminopeptidase -
           Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
           / NCTC11152)
          Length = 744

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 201 TQKQICAAVSSFRTRNQTTGTSSALTAVSDQSRWLEINQFSAWERRDNQYAHKWLIKVAG 380
           T K   A +S     N  T T +A    +D  +WL+ N++  WE   + + H + I   G
Sbjct: 309 TNKVWIAKISDNSLNNIFTDTDAAWLDTNDNIQWLKDNRYFTWESERSGWRHLYRISRDG 368

Query: 381 ADM 389
            ++
Sbjct: 369 KEI 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,711,319
Number of Sequences: 1657284
Number of extensions: 8501955
Number of successful extensions: 14933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14931
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)