Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060331.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0434 - 13980477-13980937,13981449-13981518                       31   0.86 
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735     29   4.6  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     28   6.0  

>05_03_0434 - 13980477-13980937,13981449-13981518
          Length = 176

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 177 LLPAKILPTQKQICAAVSSFRTRNQTTGTSSALTAVSDQSRWLEIN 314
           + P K LPT+K +    SSF+T    T    A  +  + + W +IN
Sbjct: 52  IAPQKTLPTEKPVVPTPSSFKTMADKTLREFAAPSAENVAIWPQIN 97


>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
          Length = 637

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 436 KPAIWDF-IIITNCFADXCPXDCLXPKRCSKMLASRF*KPXXPSRTRACPIKLRICRXEC 612
           K  ++ F +I+   F    P + L P + +  +  +  +P  PS   +CP  LR+   +C
Sbjct: 509 KVDVYSFGLILWEMFTGSVPYEDLNPFQAAFAVFDKNERPVIPS---SCPAPLRLLIEQC 565

Query: 613 FAXLPCRQXPF 645
           +A  P ++  F
Sbjct: 566 WASQPDKRPEF 576


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 436 KPAIWDF-IIITNCFADXCPXDCLXPKRCSKMLASRF*KPXXPSRTRACPIKLRICRXEC 612
           K  ++ F +++   F+   P + + P + +  + ++  +P  PS   +CP +LR+   +C
Sbjct: 475 KVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPS---SCPAQLRLLIEQC 531

Query: 613 FAXLPCRQXPF 645
           ++  P ++  F
Sbjct: 532 WSCQPEKRPEF 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,582,458
Number of Sequences: 37544
Number of extensions: 229978
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)