Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060328.seq
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    79   7e-16
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    75   1e-14
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    46   6e-06
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    31   0.13 
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   1.6  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.0  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = +3

Query: 258 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL--NGTLSDWSYFAV 431
           MG  L++P T+K++ +G    + YG++SMQGWR+ MEDAH A L++  +       +FAV
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60

Query: 432 FDGHAGARVSAHCAENLLECILQTEDFGVKT*LKXSRTGXLDLDK 566
           +DGH G +V+  C  NL + + +  DF     +   ++  L+ DK
Sbjct: 61  YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADK 105


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +3

Query: 258 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL---NGTLSDWSYFA 428
           MG  L++P   K++ SG    L +GV+ MQGWR+ MEDAH A L     N +    S+F 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 429 VFDGHAGARVSAHCAENLLECILQTEDF 512
           VFDGH G RV+ +C ++L + I     F
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSF 88


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +3

Query: 345 QGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQ 500
           Q WR  MED H       G   D  + AV+DGHAG + S +C +NL + +L+
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDD-GFVAVYDGHAGIQASDYCQKNLHKVLLE 130


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 366 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQ 500
           ED H   +  N    +W ++ +FDGH+G   S    ++L+  +++
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVR 142


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 279 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAQL--TLNGTLSDWSYFAVFD 437
           PE + YN +GE     YG AS   +    +  H  +Q    ++ ++ DW Y  +F+
Sbjct: 230 PEIQDYNFAGENGMGVYGAASAYTYSDAYQALHTRSQYLREMSNSIEDWDYELMFE 285


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 378 HAQLTLNGTLSDWSYFAVFD 437
           H  +T NG L+ WS   +FD
Sbjct: 357 HGYVTYNGWLAQWSMITLFD 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,129
Number of Sequences: 5004
Number of extensions: 38682
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)