Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060328.seq
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              33   0.25 
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   30   1.3  
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  

>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 417 SYFAVFDGHAGARVSAHCAENLLECI 494
           +Y+AVFDGHAG R S   AE+L E I
Sbjct: 454 AYYAVFDGHAGPRASLFAAEHLHENI 479


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 333 VASMQGWRVEMEDAHHAQLTLNGTLS------DWSYFAVFDGHAGARVSAHCAENLLECI 494
           V +++  R +MED H      N          +++YFAVFDGH G   +   A + L C 
Sbjct: 43  VYAIKNTRRKMEDKHVIMPHFNSLFGLPKDSPNYAYFAVFDGHGGIDAATFAATH-LHCF 101

Query: 495 LQTEDFGVK 521
           L   +  +K
Sbjct: 102 LAQNEHLIK 110


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 508 SSVCRIHSRRFSAQCAETRAPA--CPSNTAKYDQSESV 401
           S+ C+ H+RRFS  C    APA    S+ AKY  S S+
Sbjct: 204 STSCQEHARRFSVLCGPLGAPAKYAGSSNAKYAGSSSM 241


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +3

Query: 282 ETKKYNESGEGN----GLRYGVASMQG--WRVEMEDAH-HAQLTLNGTLSDWSYFAVFDG 440
           + K+Y+  G+       L +G+   +   W+  MED H       N   S   +FAVFDG
Sbjct: 521 DPKEYHVMGQSTLLNCALAFGICEDKNSRWKTTMEDRHTFCDYFCNDPQS--GFFAVFDG 578

Query: 441 HAGARVSAHCAENLLECI 494
           + GA  +   A+   E +
Sbjct: 579 YNGATAAGTSAKTFPEVL 596


>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 330 GVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECI 494
           G  S+QG +   ED     L L+    D+ YFAVFDGH G   +    + L E +
Sbjct: 92  GFNSLQGKKFVNEDRFKL-LELD---PDFYYFAVFDGHGGVSSAEFAHDKLHEIV 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,832
Number of Sequences: 59808
Number of extensions: 295012
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)