Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060328.seq
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...   106   1e-23
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    81   6e-16
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    72   3e-13
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    69   2e-12
AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical...    48   7e-06
Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical ...    43   2e-04
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    33   0.12 
Z82260-2|CAB05130.1|  344|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three pa...    28   6.1  

>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score =  106 bits (255), Expect = 1e-23
 Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
 Frame = +3

Query: 255 SMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYFA 428
           +MGAFL+KP+T K N  GEGNG+RYG++SMQGWR+ MED+H A+  ++ +    DWS+FA
Sbjct: 83  TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFA 142

Query: 429 VFDGHAGARVSAHCAENLLECILQTEDFGVKT*LKXSRTGXL 554
           VFDGHAG  ++   +  LLE ++ +E+F   T       G L
Sbjct: 143 VFDGHAGHHIANRASSQLLEHLISSEEFREMTKTLEENNGVL 184


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 37/75 (49%), Positives = 46/75 (61%)
 Frame = +3

Query: 258 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 437
           MGA+LNKP  +K  E G GNGL Y   +MQGWRV  EDAH+  + L+   +DW  F V+D
Sbjct: 1   MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLH---TDWHMFGVYD 57

Query: 438 GHAGARVSAHCAENL 482
           GH G  VS   +  L
Sbjct: 58  GHGGTEVSKFTSAKL 72


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = +3

Query: 327 YGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQ 500
           YG++SMQGWR+ MED+H A+  ++ +    DWS+FAVFDGHAG  ++   +  LLE ++ 
Sbjct: 6   YGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLIS 65

Query: 501 TEDFGVKT*LKXSRTGXL 554
           +E+F   T       G L
Sbjct: 66  SEEFREMTKTLEENNGVL 83


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 38/103 (36%), Positives = 58/103 (56%)
 Frame = +3

Query: 258 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 437
           MG  L++P TKK + S        G + MQGWRV+MEDAH   L+L       ++FAV+D
Sbjct: 1   MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLLSLPDD-PKCAFFAVYD 59

Query: 438 GHAGARVSAHCAENLLECILQTEDFGVKT*LKXSRTGXLDLDK 566
           GH G++VS +   NL + ++  ++F      +    G L+LD+
Sbjct: 60  GHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQ 102


>AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.1 protein.
          Length = 766

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +3

Query: 312 GNGLRYGVASMQGWRVEMED--AHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLL 485
           G  +R  VA+ QG R  MED    H +   NG L DW++  VFDGH G   S +   +LL
Sbjct: 16  GENMRITVAASQGGRRYMEDRCVIHTERINNGLL-DWTFVGVFDGHGGEHASEYVRRHLL 74

Query: 486 ECILQTEDF 512
             I + + F
Sbjct: 75  MNITKNQKF 83


>Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 249 RTSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLN-GT----LSD 413
           R+S     N  E+KK  ES             +G R +M+D H      + GT    LS 
Sbjct: 8   RSSDDLIDNSDESKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSR 67

Query: 414 WSYFAVFDGHAGARVSAHCAENL 482
            S+FA+FDGHAG R + HC   +
Sbjct: 68  ASFFAIFDGHAGPRAAEHCQSQM 90


>AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 249 RTSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLN-GT----LSD 413
           R+S     N  E+KK  ES             +G R +M+D H      + GT    LS 
Sbjct: 8   RSSDDLIDNSDESKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSR 67

Query: 414 WSYFAVFDGHAGARVSAHCAENL 482
            S+FA+FDGHAG R + HC   +
Sbjct: 68  ASFFAIFDGHAGPRAAEHCQSQM 90


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 366 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENL 482
           +DAH+  + L+   +DW  F V+DGH G  VS   +  L
Sbjct: 15  QDAHNCVVDLH---TDWHMFGVYDGHGGTEVSKFTSAKL 50


>Z82260-2|CAB05130.1|  344|Caenorhabditis elegans Hypothetical
           protein C32H11.3 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 351 WRVEMEDAHHAQLTLNGTLSD-WSYFAVFDGHAGARVSAH 467
           W V + + ++A+L +NG + D +S+F   D       S+H
Sbjct: 60  WIVTIPEGYYARLIINGKMGDPYSHFLTIDSAGNLITSSH 99


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 423 FAVFDGHAGARVSAHCAENL 482
           F VFDGH G + S H + NL
Sbjct: 70  FGVFDGHGGQQCSRHISTNL 89


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 FAVFDGHAGARVSAHCAENLLECILQTEDFGV 518
           + +  GHA   + AH    ++EC++ TE  G+
Sbjct: 275 YGLVKGHAAKLIYAHDTSRVIECLVATEREGI 306


>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 550 KPVRXCFSYVFTPKSSVCRIHSRRFSA 470
           KP+R CF  +  P  SV +  + RF+A
Sbjct: 9   KPIRHCFCCILVPIKSVWKRFNNRFTA 35


>AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three
           paralog protein 2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 336 ASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 437
           A MQ W   M D++ A+LTL G L   S    F+
Sbjct: 242 AHMQCWSKSMSDSYAAELTLKGHLDKVSDMYAFN 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,398
Number of Sequences: 27780
Number of extensions: 220699
Number of successful extensions: 561
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)