Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060328.seq
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 384 QLTLNGTLSDWSYFAVFDGHAGARVSAHC 470
           QL L G L DW Y+   + HA       C
Sbjct: 115 QLYLGGDL-DWKYYTTNESHACLSTGGSC 142


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -2

Query: 528 AMSSRRNPPSAEYIQEDFLHSVRRPELPHVHQTRRSTTSPRVYRSE*AARD 376
           A   RRNP        DF  S R   LP    + +   S  + ++   A D
Sbjct: 51  AFEPRRNPGPGSKGPRDFPRSHRFKSLPRCQLSNKRDRSRELIKAAILAND 101


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 327 SEDRFLPRSRYIFW--SRAYLKTP 262
           SED  +PR  Y+ W  S   +K P
Sbjct: 800 SEDSVIPRILYLTWYSSNGDIKVP 823


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 191 VANDNVKDELKHHCDTIS 138
           V NDN  D+L   C  IS
Sbjct: 91  VLNDNEADQLLAECSPIS 108


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 FYVTLIGKQGFFQTQTLLCSLSVSFIMKVNYY 23
           FY+ +  K  F+    +L ++ +SF+  + +Y
Sbjct: 225 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFY 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,581
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)