Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060327.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.4  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/49 (22%), Positives = 19/49 (38%)
 Frame = +1

Query: 109 KFAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQNTT 255
           K+ +  A+     G+      PVP  + +   KP        P++  TT
Sbjct: 371 KYPILKAIHQTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTT 419


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 169 VPVPHDIPQAPGKPEENATAVQPTKQNTT 255
           VP P   P    + E    + QPT+ +TT
Sbjct: 396 VPTPEPQPTQTTESEPTQASEQPTESSTT 424


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 677 IAQETKGXEMIPTNKALVHQMLLPCTVGSH 588
           + +ET      P  + LVH +L P   G H
Sbjct: 127 LTRETAKNTSHPFQRVLVHDILQPGVKGLH 156


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 536 ATTPKSELAKSTEAPTAHGN 595
           +TTP+ E A+    P+A G+
Sbjct: 405 STTPRPEWARPPSTPSADGS 424


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,715
Number of Sequences: 336
Number of extensions: 2226
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)