Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060327.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.4  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   4.4  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.8  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.8  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 438 GPVSEPTKIVPEHQTEAAKKSETSRQL 518
           G    P+ ++P  QTE    ++TS+QL
Sbjct: 605 GDNRSPSTVIPHTQTEVPSANDTSKQL 631


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 183 MRNGYCSSQLGSRLFSRQCYAHG 115
           ++ G C +Q+GS+ + + C  HG
Sbjct: 8   LQAGQCGNQIGSQFWQQLCLEHG 30


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 131 CRLN-SLEPNWELQYPFLMISLKLQVNLKKTQQQF 232
           CRLN S +PN ++ +   ++ L  + ++KK +Q F
Sbjct: 190 CRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLF 224


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 44  CLFLLKISFISK*RSWRSSVY*NLPCA*HCRLNSLEPNWELQYPFLMISLK 196
           C F L I ++   R+   S++ +LP      LN L+ + +L  P+  +S+K
Sbjct: 81  CFFCLLIDYLGGERAAVISLHGHLPRPRLWPLNYLQDDIDLSDPYTFLSIK 131


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 641  WESFLDPWSLGL 676
            WE FL+PW +G+
Sbjct: 1743 WEPFLEPWKVGV 1754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,648
Number of Sequences: 5004
Number of extensions: 36631
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)