Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060327.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     30   2.0  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      29   3.5  
SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3)                       29   4.7  

>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 169 VPVPHDIPQAPGKPEENAT 225
           +P PH I QA G+PE  AT
Sbjct: 371 IPTPHGITQAQGRPENTAT 389


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = -1

Query: 681 SYSPRDQGSRNDSHQQSLGPSNAL------ALYSXFPCAVGA-SVDLASSDFGVVASSFX 523
           +Y    Q S+ND+H  S G S+A       ++ +  PC++ A S+ L  ++  V++S F 
Sbjct: 509 NYITPAQHSKNDNHSPSFGTSSAAICNLQGSITADSPCSLSAPSLPLVHNELPVISSVFS 568

Query: 522 AS 517
            S
Sbjct: 569 LS 570


>SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3)
          Length = 168

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 140 NSLEPNWELQYPFLMISLK--LQVNLKKTQQQFSLRNKTQL 256
           N  + NWELQ+  L++SLK  L++  + T +  S  ++ QL
Sbjct: 79  NKQQINWELQWRRLLLSLKQSLEMLYEDTSEHSSSESRVQL 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,981
Number of Sequences: 59808
Number of extensions: 271730
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)