Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060327.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 231 NCCCVFFRFTWSLRDIMRNGYCSSQL 154
           NC   FF+F W   +  RN  C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 319 ASVTFSASGFTFLSSVLVSTAELCFVS*AELLLRFLQVY 203
           A++ F  +GF FL +  + +  +CFV   + + + LQ Y
Sbjct: 88  ATLHFGITGFAFLLTYQIGSMIICFVRKHQTIAKTLQQY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,261
Number of Sequences: 27780
Number of extensions: 212639
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)