Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060327.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    28   5.0  
At1g21790.1 68414.m02727 expressed protein                             28   5.0  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    27   8.8  

>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 136 AEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 231
           A+ S  Q  +  P+PH +P +PG P    T +
Sbjct: 66  AKISVNQYPSVFPIPHPVPPSPGHPPHQNTKI 97


>At1g21790.1 68414.m02727 expressed protein
          Length = 288

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  YLTVYSC*KLALFQNEDLGVRLFTEICHVHSI 131
           +L +  C  LAL++N  +   + T IC +HSI
Sbjct: 152 HLVLLVCFTLALYRNVTINYLILTLICEMHSI 183


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 373 ACSSGFTEAGTDDADTGVASVTFSASGFTF 284
           A SS    + + +A TG+AS  FSAS F+F
Sbjct: 237 ALSSFHQHSSSKNAFTGLASTGFSASSFSF 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,964
Number of Sequences: 28952
Number of extensions: 195639
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)