Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060325.seq
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 122 4e-28
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 7e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 70 2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 3e-10
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 62 4e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 60 2e-09
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 46 4e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 36 0.041
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.054
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18) 29 4.7
SB_32796| Best HMM Match : MSG (HMM E-Value=2.7) 29 4.7
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 29 4.7
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.2
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 6.2
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 28 6.2
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 28 6.2
SB_13819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 122 bits (293), Expect = 4e-28
Identities = 58/81 (71%), Positives = 66/81 (81%)
Frame = +1
Query: 28 SSKMQPQILLLXEGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 207
+S QP I+LL EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 208 SNDGATIMKLLDIVHPPLRLL 270
SNDGATI+ LLDIVHP + L
Sbjct: 694 SNDGATIINLLDIVHPAAKTL 714
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAE 299
PAAKTLVDIAKSQDAE
Sbjct: 709 PAAKTLVDIAKSQDAE 724
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 87.8 bits (208), Expect = 7e-18
Identities = 47/71 (66%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = +2
Query: 479 GTKRSPIEVCS-TAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALED 655
G R +E C+ TA+SSKLI QK+ F+K+VVDAV+ LD LLPLDMIG+KKV GGALED
Sbjct: 18 GEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDE-LLPLDMIGMKKVSGGALED 76
Query: 656 SFLVPGVAFKK 688
S L+ GVAFKK
Sbjct: 77 SMLIEGVAFKK 87
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 426 AIEKIKEQAVKIDNKSPEEQRDLLLKCA 509
AI++IKE AV + E R LL +CA
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCA 28
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/68 (48%), Positives = 51/68 (75%)
Frame = +3
Query: 246 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 425
+ PAAK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 15 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 74
Query: 426 AIEKIKEQ 449
I+ +K+Q
Sbjct: 75 MIDILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/68 (48%), Positives = 51/68 (75%)
Frame = +3
Query: 246 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 425
+ PAAK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 212 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 271
Query: 426 AIEKIKEQ 449
I+ +K+Q
Sbjct: 272 MIDILKQQ 279
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +3
Query: 240 GYRSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTAS 419
G +PAAK LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++ R +
Sbjct: 72 GIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSV 131
Query: 420 RLAIEKIKEQAVKIDNKSPEEQRDLLLKCAQ 512
+ A EK E A + PE+ R+ L+ A+
Sbjct: 132 K-AAEKALEAAAVDHSSDPEKFREDLMNIAR 161
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +1
Query: 49 ILLLXEGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLI--VDHNGKAVISNDGA 222
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 223 TIMKLLDIVHPPLRLLWTLQSLK 291
TI+K + I +P ++L L ++
Sbjct: 66 TILKSIGIDNPAAKILVELSKVQ 88
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGV 676
+ + T +SSK++ Q +DHF+K+ VDAVL L L+ I I K GG + DSFL G
Sbjct: 157 MNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGS-GDLNAIQIIKKLGGGMVDSFLDEGF 215
Query: 677 AFKK 688
K
Sbjct: 216 LLDK 219
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
P A + +A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A + A+
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233
Query: 432 EKIKEQAVKIDNKSPEEQRDLLLKCAQ 512
E ++E VK+ S E RD L+ A+
Sbjct: 234 EVLEE--VKV---SREMDRDTLINVAK 255
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDM 616
I V T++ +K+ + D +++VVDAVL++ P P+D+
Sbjct: 251 INVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPIDL 290
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +1
Query: 88 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIV 249
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D V
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
AK +V+++KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E
Sbjct: 86 AKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEH 145
Query: 438 IKEQA----VKIDNKSPEEQRDLLLKCAQ--QRCHR 527
+ A V DNK Q + ++ RCHR
Sbjct: 146 MDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHR 181
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/56 (39%), Positives = 41/56 (73%)
Frame = +1
Query: 103 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLL 270
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H +L+
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLM 89
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 485 KRSPIEVCSTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALED 655
K S I+ T + SK++ + ++I VDAVLS L+ + ++I ++ GG L+D
Sbjct: 160 KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDD 219
Query: 656 SFLVPGVAFKK 688
+ LV GV K
Sbjct: 220 TVLVKGVVVDK 230
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = +3
Query: 276 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 455
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 456 KIDNKSPEEQRDLLLKCAQ 512
+ PE+ RD L+ A+
Sbjct: 61 VDHSSDPEKFRDDLMNIAR 79
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPG 673
+ + T +SSK++ Q +DHF+K+ VDAVL L L+ I I K GG + DSFL G
Sbjct: 75 MNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGS-GDLNAIQIIKKLGGGMVDSFLDEG 132
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSL------DTPLLPLDMIGIKKVPGGALEDS 658
+ +TA+SSKLI QQ D F+ ++VDAV+++ P+ I + K GG+ ++S
Sbjct: 14 VSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLKAHGGSAKES 73
Query: 659 FLVPGVA 679
LV G A
Sbjct: 74 ILVDGYA 80
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 109 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLL 270
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P R++
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMI 59
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 246
+ DAV TLGP+G + +I G I+ DG T+ K +++
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIEL 118
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 243 YRSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 389
Y++ A+ + D+A + + E GDGTT+ +LA I V +G +P+
Sbjct: 122 YQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 336 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 449
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18)
Length = 270
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 416 RCSDCSDQNTRVNTFFNKRLQPLQNFT--SQYHYRGGSIANLSVLRLCNVHK 267
RC++C +KRLQPLQ+ T S + G + +S C HK
Sbjct: 48 RCNECDHFVCEQCISAHKRLQPLQHHTILSLDEIKSGKLLAMSKTPYCTKHK 99
>SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)
Length = 270
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +3
Query: 129 RRCGQNHPGSPWDGQADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGD 308
+RCG+ SP D + WK K+ C + YR+ K L +D++
Sbjct: 74 KRCGRKICNSPNDSELRRELFWKKKKFKKLCKRKKYQ-YRASGIKNL----DFKDSKKLW 128
Query: 309 GTTSVVILAGEILKRLKPFVE-EGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 485
+ + G+ K+ + +E E +H + T + L+I K ++Q +D++ E+
Sbjct: 129 RSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSISKCRDQTGPLDSEIRLEE 188
Query: 486 RDLLLK 503
L ++
Sbjct: 189 VKLAIE 194
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 169 DKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLLWTLQSLKTLRLAME 312
++L + N ++ +GA + +DI+ PL + W L T+R++++
Sbjct: 1111 EELEAERNARSKHPLNGALLSCQVDIIRIPLHIAWVLICQATIRVSLD 1158
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +3
Query: 129 RRCGQNHPGSPWDGQADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGD 308
+RCG+ SP D + WK K+ C + YR+ K L +D++
Sbjct: 1161 KRCGRKICNSPNDSELRRELFWKKKKFKKLCKRKKYQ-YRASGIKNL----DFKDSKKLW 1215
Query: 309 GTTSVVILAGEILKRLKPFVE-EGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 485
+ + G+ K+ + +E E +H + T + L+I K ++Q +D++ E+
Sbjct: 1216 RSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSIPKCRDQTGPLDSEIRLEE 1275
Query: 486 RDLLLK 503
L ++
Sbjct: 1276 VKLAIE 1281
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 114 CLSTCRRCGQNHPGSPWDGQADCRSQWKGGYIKRWC 221
C TC C N SP+ GQ +C S + G ++ C
Sbjct: 142 CQGTCD-CKNNATCSPFTGQCNCTSGFTGDRCEKQC 176
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +3
Query: 129 RRCGQNHPGSPWDGQADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGD 308
+RCG+ SP D + WK K+ C + YR+ K L +D++
Sbjct: 518 KRCGRKICNSPNDSELRRELFWKKKKFKKLCKRKKYQ-YRASGIKNL----DFKDSKKLW 572
Query: 309 GTTSVVILAGEILKRLKPFVE-EGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 485
+ + G+ K+ + +E E +H + T + L+I K ++Q +D++ E+
Sbjct: 573 RSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSIPKCRDQTGPLDSEIRLEE 632
Query: 486 RDLLLK 503
L ++
Sbjct: 633 VKLAIE 638
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +3
Query: 129 RRCGQNHPGSPWDGQADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGD 308
+RCG+ SP D + WK K+ C + YR+ K L +D++
Sbjct: 881 KRCGRKICNSPNDSELRRELFWKKKKFKKLCKRKKYQ-YRASGIKNL----DFKDSKKLW 935
Query: 309 GTTSVVILAGEILKRLKPFVE-EGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 485
+ + G+ K+ + +E E +H + T + L+I K ++Q +D++ E+
Sbjct: 936 RSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSIPKCRDQTGPLDSEIRLEE 995
Query: 486 RDLLLK 503
L ++
Sbjct: 996 VKLAIE 1001
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 416 RCSDCSDQNTRVNTFFNKRLQPLQNFTSQYHY 321
R S+ ++QNT V+ +N +QP N+ S+Y Y
Sbjct: 209 RISEFANQNTLVS-IYNAIIQPHLNYCSEYEY 239
>SB_13819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Frame = +3
Query: 171 QADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILK 350
++D R + K K+ E R +A++ ++ A+ + D V+ + E+L
Sbjct: 108 RSDLRGEIKSACQKQLTAQRENLSMRLASARSSLEFAERMCRDAND--VDVLSIRNEVLS 165
Query: 351 RLKPFVEEGVHPRVLIRAVRT----------ASRLAIEK---IKEQAVKIDNKSPEEQRD 491
+L E+ V + VR + ++++E+ + EQ+ + K PE RD
Sbjct: 166 QLSSLAEKPVDQPCMEDGVRLVVDEEYWDSLSKKISVERRTAVFEQSAILSGKGPEYLRD 225
Query: 492 LL 497
LL
Sbjct: 226 LL 227
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 96 ARLQHQCLSTCRRCGQN--HPGSPWDGQADCRSQWK 197
+RLQH+C++ C CG++ P P + D R WK
Sbjct: 412 SRLQHKCVNLCYGCGESDCSPLVP-PPEQDHRWDWK 446
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 88 KPQLVSNINACQLVVDAVRTTLGPRGMD 171
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,876,737
Number of Sequences: 59808
Number of extensions: 448196
Number of successful extensions: 1400
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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