Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060325.seq
         (690 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    25   2.3  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   3.9  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   5.2  
AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenin...    24   5.2  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/proton
            exchanger 3 protein.
          Length = 1221

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 159  PWD--GQADCRSQWKGGYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAE 299
            PW    ++D     K      W +N E   Y SP+A  L  + + + A+
Sbjct: 953  PWKRVDESDDNGAIKQNEFPSWASNKEYLAYNSPSATFLGGLTQPKQAK 1001


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 619 WNQEGSRWSS*RFVPGTWC 675
           W + G RW   +F+P ++C
Sbjct: 244 WRRAGRRWKVGQFLPESFC 262


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 371 FNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHK 267
           +NK ++P+QN T +   R G    L+ ++L NV++
Sbjct: 38  YNKLIRPVQNMTQKVDVRFG----LAFVQLINVNE 68


>AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenine
           transaminase protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 154 GPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLLWTLQSLKTL 297
           GP    K ++      V+SN  A + + +D V   LR ++  ++  T+
Sbjct: 25  GPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATM 72


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,641
Number of Sequences: 2352
Number of extensions: 14031
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)