Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060325.seq
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 124 7e-29
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 77 8e-15
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 71 6e-13
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 71 6e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 69 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 64 8e-11
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 64 8e-11
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 63 1e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 55 5e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 55 5e-08
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 37 0.014
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 35 0.044
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.077
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.077
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.077
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.10
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.14
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.14
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.18
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.18
At5g64910.1 68418.m08165 expressed protein ; expression support... 29 2.2
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00... 29 2.2
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 29 2.9
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.8
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 28 5.1
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 28 6.7
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 6.7
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 27 8.9
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 27 8.9
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 27 8.9
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 124 bits (298), Expect = 7e-29
Identities = 60/81 (74%), Positives = 65/81 (80%)
Frame = +1
Query: 28 SSKMQPQILLLXEGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 207
+S MQPQI+LL EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 208 SNDGATIMKLLDIVHPPLRLL 270
SNDGATIMKLLDIVHP ++L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 120 bits (289), Expect = 9e-28
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
PAAK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 432 EKIKEQAVKIDNKSPEEQRDLLLKCA 509
K+KE AV I+ KS EE++ LL KCA
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCA 162
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 485 KRSPIEVCS-TAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSF 661
K+ + C+ T +SSKLI +K+ F+ +VVDAV+++ L++IGIKKVPGG + DSF
Sbjct: 154 KKGLLAKCAATTLSSKLIGGEKEFFATMVVDAVMAIGNDDR-LNLIGIKKVPGGNMRDSF 212
Query: 662 LVPGVAFKK 688
LV GVAFKK
Sbjct: 213 LVDGVAFKK 221
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 77.4 bits (182), Expect = 8e-15
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 SPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 428
+PAAK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 429 IEKIKEQAVKIDNK-SPEEQRDLLLKCA 509
+ ++ IDNK + E+ R LLK A
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLKIA 158
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGV 676
+++ T + SK++ Q K+HF+++ VDAV L L+ I I K PGG+L+DSFL G
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGS-TNLEAIQIIKKPGGSLKDSFLDEGF 213
Query: 677 AFKK 688
K
Sbjct: 214 ILDK 217
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +1
Query: 55 LLXEGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 228
+ + + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 229 MKLLDIVHPPLRLL 270
+K L I +P ++L
Sbjct: 66 LKSLHIDNPAAKVL 79
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 71.3 bits (167), Expect = 6e-13
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
PAAK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 432 EKIKEQAVKIDNKSPEEQRDLLLKC 506
+ + A+ ID + L+ C
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSC 157
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = +1
Query: 37 MQPQILLLXEGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 216
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 217 GATIMKLLDIVHP 255
G I++ LD+ HP
Sbjct: 61 GNAILRELDVAHP 73
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +2
Query: 512 TAMSSKLIHQQKDHFSKIVVDAV----LSLDTPLLPLDM---IGIKKVPGGALEDSFLVP 670
+ + +K Q D + + +DA + L L +D+ I ++KVPGG EDS ++
Sbjct: 156 SCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFEDSEVLK 215
Query: 671 GVAFKK 688
GV F K
Sbjct: 216 GVMFNK 221
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/73 (42%), Positives = 49/73 (67%)
Frame = +1
Query: 73 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVH 252
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 253 PPLRLLWTLQSLK 291
P ++L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
PAAK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 432 EKIKEQAV 455
+ I+E+ V
Sbjct: 133 KYIEEKLV 140
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTP------LLPLDMIGIKKVPGGALEDS 658
I T+MSSKLI D F+ +VV+AVLS+ P+ I I K G + DS
Sbjct: 152 INCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDS 211
Query: 659 FLVPGVA 679
+L+ G A
Sbjct: 212 YLLNGYA 218
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 68.5 bits (160), Expect = 4e-12
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = +1
Query: 103 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLL 270
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ P ++L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
PAAK LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 432 EKIKEQAVKIDNKSPEEQRDLLLKCA 509
+ + AV ++ RD L+K A
Sbjct: 142 DILTAMAVPVE----LTDRDSLVKSA 163
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 491 SPIEVCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIK--KVPGGALEDS 658
S ++ ST+++SK++ Q + + VDAVLS+ P P +D+ IK K GG ++D+
Sbjct: 158 SLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDT 217
Query: 659 FLVPGVAFKK 688
V G+ F K
Sbjct: 218 HTVKGLVFDK 227
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 438 IKEQAVKID 464
++ A K +
Sbjct: 68 LERIAQKFE 76
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDSFLV 667
++ C T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+ L+
Sbjct: 86 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 145
Query: 668 PGVAFKK 688
G+ K
Sbjct: 146 YGILIDK 152
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 143
Query: 438 IKEQAVKID 464
++ A K +
Sbjct: 144 LERIAQKFE 152
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/56 (39%), Positives = 39/56 (69%)
Frame = +1
Query: 103 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPPLRLL 270
+NI A + V +R++LGP+GMDK++ +G I+NDGATI++ +D+ + +L+
Sbjct: 32 ANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLM 87
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = +2
Query: 497 IEVCSTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDSFLV 667
++ C T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+ L+
Sbjct: 162 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 221
Query: 668 PGVAFKK 688
G+ K
Sbjct: 222 YGILIDK 228
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +1
Query: 37 MQPQIL--LLXEGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 207
MQP + +L EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 208 SNDGATIMKLLDIVHPPLRLL 270
+ND ATI+ L+I HP +LL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 252 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 431
PAAK LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 432 EKIKEQAVKIDNKS 473
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 246 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 425
++P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 426 AIE 434
++
Sbjct: 129 TLQ 131
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 109 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNP 71
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 246 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 425
++P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 426 AIE 434
++
Sbjct: 129 TLQ 131
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 109 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNP 71
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 503 VCSTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 628
V T + +KL D + IVV++VL + P P+D+ ++
Sbjct: 154 VARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVE 195
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
A + ++A + GDGTT+ ILA EI+K V G +P L R + + IE+
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 438 IKEQA 452
++++A
Sbjct: 175 LQKKA 179
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 246
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
AK + A + GDGTT+ V+LA ++ V G +P ++ R + ++ + +
Sbjct: 122 AKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAE 181
Query: 438 IKEQAVKIDN 467
+K+ + ++++
Sbjct: 182 LKKMSKEVED 191
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 246
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 255 AAKTLV-DIAKSQDAEVGDGTTSVVILAGEILK 350
A TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 100 AGATLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 279 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 458
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 459 IDN 467
+++
Sbjct: 193 VED 195
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 279 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 458
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 459 IDN 467
+++
Sbjct: 193 VED 195
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 243
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 243
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 234
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 258 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 437
A+ + +A + + GDGTT +L IL V GV+ L + A +
Sbjct: 101 AELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSD 160
Query: 438 IKEQAVKIDNKSPEE 482
+K +AV I +PEE
Sbjct: 161 LKSRAVMI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 279 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 458
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 459 IDN 467
+++
Sbjct: 189 VED 191
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
+ D V TLGP+G + ++ G I NDG T+ + +++ P
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP 116
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 124 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 255
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 279 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 458
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 459 IDN 467
I++
Sbjct: 177 IED 179
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 545 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 640
KD ++V V+ +D+P+ P D IG+ V G
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQG 276
>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
F-box domain
Length = 492
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/116 (19%), Positives = 49/116 (42%)
Frame = +3
Query: 201 GYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGV 380
G+I WC+ ++V P+ + +++ + D E + L++L +EE +
Sbjct: 327 GWIPEWCDGYQVFYLFKPSFSSAIELKQKVDVETMNMVHGDDCKYISTLRKLMSLIEE-I 385
Query: 381 HPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAQQRCHRN*FINRR 548
P + RL E+ + + +D S + D++ ++R IN+R
Sbjct: 386 SPYAKRLFKKKGKRLMTEEETKLKMTVDEPSSSKCLDVMRFSKKRRFLGMEKINKR 441
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -2
Query: 362 RLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLSGG*TISSNFMIVAP 216
+L+ + F Y+ GS+A ++L C HK+++ ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 345 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 485
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 369 QQTASTSSEFH-QPISLPRWFHRQPQRLETLQCP 271
Q TA+TSS QP+ P F QPQ L+ LQ P
Sbjct: 409 QNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQPP 442
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 103 SNINACQLVVDAVRTTLGPRGMDK 174
+NI+A + V +R++LGP+GM+K
Sbjct: 32 ANISAGKAVARILRSSLGPKGMEK 55
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 413 CSDCSDQNTRVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRL-CN-VHKSLSG 255
C D + +N+F NK+ P + Q Y G + L VL CN HK G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 KTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 425
K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 732 KRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.5 bits (58), Expect = 8.9
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +3
Query: 186 SQWKGGYIKRWCNNHEVTGYRSPAAKTLVDI--AKSQDAEVGDGTTSVVILAGEILKRLK 359
S+ GG +K N+ + RS KT V + +K D + G TS I ++ K
Sbjct: 67 SKKSGGIVK---NSTPSSLRRSNRGKTEVSLQSSKGSDNSIRKGDTSPDI------EQRK 117
Query: 360 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAQQ 515
VEE I + R+ L K+KE +D SP E+ +++ C+++
Sbjct: 118 DSVEESTDKIKPIMSARSYRALFRGKLKESEALVD-ASPNEEELVVVGCSRR 168
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.5 bits (58), Expect = 8.9
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +3
Query: 186 SQWKGGYIKRWCNNHEVTGYRSPAAKTLVDI--AKSQDAEVGDGTTSVVILAGEILKRLK 359
S+ GG +K N+ + RS KT V + +K D + G TS I ++ K
Sbjct: 67 SKKSGGIVK---NSTPSSLRRSNRGKTEVSLQSSKGSDNSIRKGDTSPDI------EQRK 117
Query: 360 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAQQ 515
VEE I + R+ L K+KE +D SP E+ +++ C+++
Sbjct: 118 DSVEESTDKIKPIMSARSYRALFRGKLKESEALVD-ASPNEEELVVVGCSRR 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,033
Number of Sequences: 28952
Number of extensions: 315479
Number of successful extensions: 968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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