Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060323.seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   137   2e-33
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   130   2e-31
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.16 
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   1.1  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   3.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   5.9  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  137 bits (331), Expect = 2e-33
 Identities = 70/146 (47%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
 Frame = +1

Query: 256 IFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNIN 435
           I+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GKGVL A+ N+N
Sbjct: 11  IYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGKGVLKAVGNVN 70

Query: 436 ELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFPL 615
            +IAP + KANL+VT Q+  DE +L                             +K  PL
Sbjct: 71  NIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICRAGAAQKKLPL 130

Query: 616 YKHLADLAG-NNDIVLPVPAFNVING 690
           +K++A+  G     VLPVP+FNV+NG
Sbjct: 131 WKYIAENFGTKGPYVLPVPSFNVLNG 156


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  130 bits (314), Expect = 2e-31
 Identities = 67/147 (45%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
 Frame = +1

Query: 253 SIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 432
           SI+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV  A+ N+
Sbjct: 11  SIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGVTIAVHNV 70

Query: 433 NELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFP 612
           N +I P L K+++++T QR IDE M+                                 P
Sbjct: 71  NNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAAAAFLKIP 130

Query: 613 LYKHLADLAGNNDI-VLPVPAFNVING 690
           LY+++  LAG+     +PVP+FNV+NG
Sbjct: 131 LYEYIGKLAGSKTTECIPVPSFNVLNG 157


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +1

Query: 232 NKINQGSSIFDSRGNPTVEVDLVTELGLFRAAVPSGASTG 351
           N  NQ +S F     PTV VDL     L RA  P   STG
Sbjct: 519 NSGNQSTSSFSRYNQPTVSVDLRNSSILRRAQEPVNGSTG 558


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +1

Query: 262 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 441
           D +G    +VD       ++A     +ST     LE R N + E     V TAI  + E 
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198

Query: 442 IAPELTKANLEV 477
              ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 569 PSCC*GWCCQEKCFR 613
           PSCC G CC+E+  R
Sbjct: 490 PSCCGGHCCKEESCR 504


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +1

Query: 271  GNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAP 450
            G P +   ++  LG F +   S  S  +    ++ + + +E H    +   K +NE +A 
Sbjct: 1109 GEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLATEIHYAASVGQNKYLNEYVA- 1167

Query: 451  ELTKANLEVTQQREIDE 501
             L + N E T   E+ +
Sbjct: 1168 SLIRTN-EKTHSTELSQ 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,181
Number of Sequences: 5004
Number of extensions: 43234
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)