Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060323.seq
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 134 8e-32
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 126 2e-29
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 118 3e-27
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 94 1e-19
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 65 4e-11
09_01_0154 + 2298432-2299415 31 1.1
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.5
01_01_0796 + 6190931-6192745 28 6.1
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 134 bits (323), Expect = 8e-32
Identities = 73/146 (50%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 432
I DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GKGVL A++NI
Sbjct: 59 IVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKGVLNAVRNI 118
Query: 433 NELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFP 612
NE+IAP+L ++V Q ++D +ML K P
Sbjct: 119 NEVIAPKL--VGVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCRAGAGAKEVP 176
Query: 613 LYKHLADLAGNNDIVLPVPAFNVING 690
LYKH+ +LAG ++V+PVPAFNVING
Sbjct: 177 LYKHIQELAGTKELVMPVPAFNVING 202
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 126 bits (304), Expect = 2e-29
Identities = 75/152 (49%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 432
IFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGV A+ N+
Sbjct: 13 IFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVSKAVDNV 71
Query: 433 NELIAPELTKANLEVTQQREIDELMLSWM-ALRTNPNWVXXXXXXXXXXXXXXXXPR--- 600
N +IAP L + T Q E+D M+ + + W +
Sbjct: 72 NSVIAPAL--IGKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLAICKAGA 129
Query: 601 --KMFPLYKHLADLAGNNDIVLPVPAFNVING 690
K PLY+H+A+LAGN +VLPVPAFNVING
Sbjct: 130 IIKKIPLYQHIANLAGNKQLVLPVPAFNVING 161
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 118 bits (285), Expect = 3e-27
Identities = 74/155 (47%), Positives = 91/155 (58%), Gaps = 10/155 (6%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 432
IFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y GKGVL A+ N+
Sbjct: 13 IFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDYLGKGVLKAVSNV 71
Query: 433 NELIAPELTKANLEVTQQREIDELMLSWM-ALRTNPNWVXXXXXXXXXXXXXXXXPR--- 600
N +I P L + T+Q +ID M+ + N W +
Sbjct: 72 NTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVSLAVCKAGA 129
Query: 601 --KMFPLYK---HLADLAGNNDIVLPVPAFNVING 690
K PLY+ H+A+LAGN +VLPVPAFNVING
Sbjct: 130 MVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVING 164
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 93.9 bits (223), Expect = 1e-19
Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 432
IFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGVL A+ N+
Sbjct: 13 IFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVLKAVDNV 71
Query: 433 NELIAPELTKANLEVTQQREIDELML 510
N +I P L + T+Q ID M+
Sbjct: 72 NSIIGPAL--IGKDPTEQTVIDNFMV 95
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 65.3 bits (152), Expect = 4e-11
Identities = 42/145 (28%), Positives = 64/145 (44%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNIN 435
I D RG P VEV L T + RA+ + + A +RD K + + V A++ IN
Sbjct: 55 ILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAVADAVRVIN 114
Query: 436 ELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFPL 615
+ ++ L ++ QQ +ID+ ++ K PL
Sbjct: 115 DKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAGAAEKEVPL 172
Query: 616 YKHLADLAGNNDIVLPVPAFNVING 690
YKH+A+L G + LP+PA VING
Sbjct: 173 YKHIAELVGKSATTLPIPAITVING 197
>09_01_0154 + 2298432-2299415
Length = 327
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 148 INPLIPSIDTRNLFAVSXXVY*FSIKNGNKINQG-SSIFDS--RGNPTVEVD-LVTELGL 315
+NPL PS+D+ + A V+ ++ KN QG ++ DS RG+ V + LV+ L +
Sbjct: 56 VNPLAPSLDSIHSLATGVLVHVYAPKNTTDDGQGQATATDSLIRGHAIVYLAYLVSRLTV 115
Query: 316 FRAAVPSGAST 348
AV +G +T
Sbjct: 116 QVVAVVAGCTT 126
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 310 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 453
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 310 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLE 474
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAE 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,860
Number of Sequences: 37544
Number of extensions: 263837
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -